STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0556Excinuclease ABC C subunit domain protein; InterPro IPR000305; KEGG: cyh:Cyan8802_3969 group I intron endonuclease; PFAM: Excinuclease ABC C subunit domain protein; SMART: Excinuclease ABC C subunit domain protein; SPTR: C7QQW2 Group I intron endonuclease; PFAM: GIY-YIG catalytic domain; TIGRFAM: group I intron endonuclease. (549 aa)    
Predicted Functional Partners:
Deba_0557
COGs: COG0288 Carbonic anhydrase; InterPro IPR001765; KEGG: pca:Pcar_2939 carbonic anhydrase; PFAM: carbonic anhydrase; SPTR: Q3A0D3 Carbonic anhydrase; PFAM: Carbonic anhydrase.
 
     0.494
Deba_1083
InterPro IPR000620; KEGG: gur:Gura_2208 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: A5G3M5 Putative uncharacterized protein; PFAM: EamA-like transporter family.
  
    0.437
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.