STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_05654Fe-4S ferredoxin, iron-sulfur binding protein; COGs: COG0247 Fe-S oxidoreductase; InterPro IPR009051:IPR012285:IPR017896:IPR017900; KEGG: mta:Moth_1606 4Fe-4S ferredoxin, iron-sulfur binding; SPTR: Q2RI27 4Fe-4S ferredoxin, iron-sulfur binding. (541 aa)    
Predicted Functional Partners:
Deba_0564
COGs: COG2181 Nitrate reductase gamma subunit; InterPro IPR003816; KEGG: drt:Dret_0235 nitrate reductase gamma subunit; PFAM: Nitrate reductase gamma subunit; SPTR: C8WZR2 Membrane-bound menaquinol oxidoreductase, cytochrome b subunit; PFAM: Nitrate reductase gamma subunit.
 
 
 0.962
Deba_0566
InterPro IPR011031; KEGG: sfu:Sfum_1148 cytochrome c family protein; SPTR: A0LHD9 Cytochrome c family protein.
 
    0.960
Deba_0568
COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: dol:Dole_0454 polysulphide reductase NrfD; PFAM: Polysulphide reductase NrfD; SPTR: A8ZTK0 Polysulphide reductase NrfD; PFAM: Polysulphide reductase, NrfD.
 
  
 0.952
Deba_0563
KEGG: sfu:Sfum_1145 hypothetical protein; SPTR: A0LHD6 Putative uncharacterized protein.
 
     0.931
Deba_0567
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterProIPR001450:IPR006311:IPR017909:IPR017896:IPR 017900; KEGG: dal:Dalk_0608 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FJN5 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
  
 0.927
Deba_0960
COGs: COG2221 Dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits; InterPro IPR006067:IPR011806; KEGG: dal:Dalk_4301 sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; PRIAM: Hydrogensulfite reductase; SPTR: Q93EU9 Dissimilatory sulfite reductase alpha subunit (Fragment); TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: Nitrite and sulphite reductase 4Fe-4S domain; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit.
 
 
 0.899
Deba_0959
COGs: COG2221 Dissimilatory sulfite reductase (desulfoviridin) alpha and beta subunits; InterProIPR005117:IPR006067:IPR001450:IPR017900:IPR 017896:IPR011808; KEGG: sfu:Sfum_4043 sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: Hydrogensulfite reductase; SPTR: A0LQK7 Sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: Nitrite an [...]
 
 
 0.897
Deba_2000
Sulfur relay protein, TusE/DsrC/DsvC family; COGs: COG2920 Dissimilatory sulfite reductase (desulfoviridin) gamma subunit; InterPro IPR007453; KEGG: drt:Dret_1739 sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; PRIAM: Hydrogensulfite reductase; SPTR: C0GTM7 Sulfur relay protein, TusE/DsrC/DsvC family; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC like protein; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family.
 
 
 
 0.829
Deba_2611
Protein of unknown function DUF1121; InterPro IPR009501; KEGG: cbe:Cbei_1426 hypothetical protein; PFAM: protein of unknown function DUF1121; SPTR: C5RES9 Putative uncharacterized protein; PFAM: Uncharacterised ACR, YkgG family COG1556.
  
 
 0.713
Deba_0981
InterPro IPR001450:IPR017900:IPR017896:IPR011802; KEGG: sfu:Sfum_1047 adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A6ZJS6 AprB (Fragment); TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: Adenosine-5'-phosphosulfate reductase beta subunit; TIGRFAM: adenosine phosphosulphate reductase, beta subunit.
  
   
 0.696
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.