STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0588TPR repeat-containing protein; InterPro IPR001440:IPR019734:IPR011990:IPR013026; KEGG: rca:Rcas_0215 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; SPTR: A7NFW7 Tetratricopeptide TPR_2 repeat protein. (438 aa)    
Predicted Functional Partners:
Deba_0907
Tetratricopeptide TPR_2 repeat protein; InterProIPR019734:IPR013026:IPR011990:IPR001440:IPR 013105; KEGG: dvm:DvMF_1325 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: B8DLL2 TPR repeat-containing protein; TIGRFAM: outer membrane assembly lipoprotein YfiO.
 
  
 0.808
Deba_2689
Hypothetical protein; InterPro IPR002345:IPR011990; KEGG: sti:Sthe_1174 tetratricopeptide TPR_4; SPTR: D1C2Z3 Tetratricopeptide TPR_4; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
 
  
 0.801
Deba_3075
Hypothetical protein; InterPro IPR013830:IPR013831; KEGG: mgm:Mmc1_1079 GDSL family lipase; SPTR: A0L6K4 Lipolytic enzyme, G-D-S-L family.
 
    0.787
Deba_3031
KEGG: gvi:glr2966 hypothetical protein; SPTR: Q7NCL2 Glr2966 protein.
 
   
 0.779
Deba_2369
InterPro IPR012480; KEGG: app:CAP2UW1_0857 heparinase II/III family protein; PFAM: Heparinase II/III family protein; SPTR: C7RNQ9 Heparinase II/III family protein; PFAM: Heparinase II/III-like protein.
 
     0.776
Deba_3244
InterPro IPR008969; KEGG: hypothetical protein; SPTR: B7G5I9 Predicted protein.
 
     0.772
Deba_3096
Hypothetical protein; KEGG: phe:Phep_2408 heparinase II/III family protein; SPTR: B0NLH9 Putative uncharacterized protein.
  
     0.771
Deba_2343
KEGG: dma:DMR_23530 hypothetical protein; SPTR: C4XT02 Putative uncharacterized protein.
  
     0.767
Deba_3246
KEGG: rca:Rcas_3345 hypothetical protein; SPTR: A7NP99 Putative uncharacterized protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.764
Deba_2346
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: mag:amb0148 hypothetical protein; PFAM: glycosyl transferase group 1; SPTR: B4D5P9 Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1.
  
     0.759
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.