STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
Deba_0592Protein of unknown function DUF140; COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR002645:IPR003453; KEGG: dba:Dbac_0468 protein of unknown function DUF140; PFAM: protein of unknown function DUF140; Sulfate transporter/antisigma-factor antagonist STAS; SPTR: C7LVW4 Putative uncharacterized protein; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein. (380 aa)    
Predicted Functional Partners:
Deba_0591
ABC transporter related protein; COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: pca:Pcar_2750 ABC-type transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B9ZQV3 ABC transporter related protein; PFAM: ABC transporter.
 
 0.998
Deba_0203
ABC transporter related protein; COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: sat:SYN_00410 ABC-type transport system, ATP-binding component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q2LS07 ABC-type transport system, ATP-binding component; PFAM: ABC transporter.
 
 0.995
Deba_0590
Mammalian cell entry related domain protein; COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: dol:Dole_1015 hypothetical protein; PFAM: Mammalian cell entry related domain protein; SPTR: A8ZWW9 Mammalian cell entry related domain protein; PFAM: mce related protein.
 
 0.995
Deba_0202
Mammalian cell entry related domain protein; COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399:IPR005829; KEGG: drt:Dret_0678 mammalian cell entry related domain protein; PFAM: Mammalian cell entry related domain protein; SPTR: C8X0M3 Mammalian cell entry related domain protein; PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein.
 
 0.991
Deba_0204
Protein of unknown function DUF140; COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: sat:SYN_00411 ABC-type transport system involved in resistance to organic solvents, permease component; PFAM: protein of unknown function DUF140; SPTR: Q2LS08 ABC-type transport system involved in resistance to organic solvents, permease component; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein.
  
  
 
0.910
Deba_0589
Protein of unknown function DUF330; InterPro IPR005586; KEGG: dol:Dole_1014 ABC-type transport system auxiliary component-like protein; PFAM: protein of unknown function DUF330; SPTR: A8ZWW8 ABC-type transport system auxiliary component-like protein; PFAM: Protein of unknown function (DUF330).
 
  
 0.779
Deba_0593
Hypothetical protein; KEGG: asa:ASA_4345 sensory histidine kinase CreC; SPTR: Q0UKW3 Putative uncharacterized protein.
       0.641
Deba_1233
Putative anti-anti-sigma factor; InterPro IPR002645; KEGG: xca:xccb100_1462 putative anti-anti-sigma factor; SPTR: Q8P7B2 Putative uncharacterized protein.
  
 
 0.601
Deba_0595
Protein-disulfide reductase; COGs: COG4232 Thiol:disulfide interchange protein; InterPro IPR003834:IPR012336:IPR012335:IPR017936; KEGG: sfu:Sfum_2885 cytochrome c biogenesis protein, transmembrane region; PFAM: cytochrome c biogenesis protein transmembrane region; PRIAM: Protein-disulfide reductase; SPTR: C0GMD4 Cytochrome c biogenesis protein transmembrane region; PFAM: Thioredoxin; Cytochrome C biogenesis protein transmembrane region.
 
     0.587
Deba_0839
Surface antigen (D15); COGs: COG0729 Outer membrane protein; InterPro IPR010827:IPR000184; KEGG: sfu:Sfum_0758 surface antigen (D15); PFAM: surface antigen (D15); surface antigen variable number repeat protein; SPTR: A0LGA4 Surface antigen (D15); PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
 
     0.581
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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