STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0651KEGG: mxa:MXAN_4632 putative lipoprotein; SPTR: Q1D3H5 Putative lipoprotein. (212 aa)    
Predicted Functional Partners:
Deba_0652
COGs: COG0015 Adenylosuccinate lyase; InterProIPR004769:IPR008948:IPR000362:IPR003031:IPR 019468:IPR020557; KEGG: dal:Dalk_1188 adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase-like; SPTR: B8F9E5 Adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.795
Deba_0653
Protein of unknown function DUF401; COGs: COG1906 conserved hypothetical protein; InterPro IPR007294; KEGG: dol:Dole_1082 hypothetical protein; PFAM: protein of unknown function DUF401; SPTR: A8ZX33 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF401); TIGRFAM: converved hypothetical integral membrane protein.
       0.518
Deba_0654
KEGG: dma:DMR_30720 hypothetical protein; SPTR: C4XII7 Putative uncharacterized protein.
       0.518
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.