STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0687Xylose isomerase domain protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR013022:IPR012307; KEGG: adg:Adeg_0325 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: C9RB61 Xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase-like TIM barrel. (322 aa)    
Predicted Functional Partners:
Deba_2421
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR011004:IPR000683:IPR001451; KEGG: cbc:CbuK_0696 NAD-dependent oxidoreductase; PFAM: oxidoreductase domain protein; transferase hexapeptide repeat containing protein; SPTR: B6J6Q3 NAD-dependent oxidoreductase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Bacterial transferase hexapeptide (three repeats).
  
  
 0.768
Deba_2103
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104:IPR016040; KEGG: aeh:Mlg_0316 oxidoreductase domain-containing protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Q0ABW6 Oxidoreductase domain protein; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold.
  
  
 0.703
Deba_1936
PfkB domain protein; COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002173:IPR011611; KEGG: dvm:DvMF_2935 PfkB domain protein; PFAM: PfkB domain protein; SPTR: B8DSB7 PfkB domain protein; PFAM: pfkB family carbohydrate kinase.
  
  
 0.685
Deba_0686
COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR003660:IPR004089:IPR004090; KEGG: vap:Vapar_4189 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: C5CXU6 Methyl-accepting chemotaxis sensory transducer; PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain.
  
    0.571
iscS
Cysteine desulfurase NifS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
       0.556
Deba_1258
COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterProIPR015590:IPR001670:IPR018211:IPR016160:IPR 016162:IPR016161; KEGG: dal:Dalk_3586 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; iron-containing alcohol dehydrogenase; SPTR: B8FGP4 Aldehyde Dehydrogenase; PFAM: Aldehyde dehydrogenase family; Iron-containing alcohol dehydrogenase.
  
  
 0.556
Deba_0689
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
       0.551
Deba_0690
methylmalonyl-CoA epimerase; InterPro IPR017515:IPR004360; KEGG: sfu:Sfum_0455 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: A0LFF3 Methylmalonyl-CoA epimerase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase.
     
 0.518
Deba_2234
Ketose-bisphosphate aldolase class-II; COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR013785:IPR000771; KEGG: gur:Gura_3299 fructose/tagatose bisphosphate aldolase-like protein; PFAM: ketose-bisphosphate aldolase class-II; SPTR: A5G6N8 Fructose-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase class-II.
  
  
 0.517
Deba_0685
Isochorismatase hydrolase; InterPro IPR000868; KEGG: aba:Acid345_0669 isochorismatase hydrolase; PFAM: isochorismatase hydrolase; SPTR: Q1ITX6 Isochorismatase hydrolase; PFAM: Isochorismatase family.
       0.494
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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