STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0711Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR016196:IPR001958:IPR011701:IPR005829; KEGG: drt:Dret_2117 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: C8X4C7 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily. (402 aa)    
Predicted Functional Partners:
Deba_0710
COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702; KEGG: mhu:Mhun_1561 acetyl-CoA hydrolase/transferase; PFAM: acetyl-CoA hydrolase/transferase; SPTR: Q2FRF0 Acetyl-CoA hydrolase/transferase; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain.
       0.634
Deba_2329
COGs: COG4786 Flagellar basal body rod protein; InterProIPR019776:IPR001444:IPR010930:IPR020013:IPR 012836; KEGG: geo:Geob_0627 flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; SPTR: B9M0F5 Flagellar basal-body rod protein FlgF; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body protein; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body proteins.
   
   0.526
Deba_0709
COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670:IPR018211; KEGG: tai:Taci_1279 iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: Q1NLZ5 Iron-containing alcohol dehydrogenase; PFAM: Iron-containing alcohol dehydrogenase.
     
 0.422
Deba_0850
Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR016196:IPR011701:IPR005829; KEGG: dol:Dole_1430 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: A8ZZ81 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily.
  
  
 0.412
Deba_1290
COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain con [...]
     
 0.401
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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