STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0713COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR011330:IPR002509; KEGG: sco:SCO2710 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Q9KYG2 Putative polysaccharide deacetylase; PFAM: Polysaccharide deacetylase. (261 aa)    
Predicted Functional Partners:
Deba_0712
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bav:BAV2236 lipopolysaccharide core biosynthesis glycosyl transferase; PFAM: glycosyl transferase family 2; SPTR: Q2KYR6 Lipopolysaccharide core biosynthesis glycosyl transferase; PFAM: Glycosyl transferase family 2.
  
  
 0.835
Deba_0714
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: nam:NAMH_1720 putative WalR protein; PFAM: glycosyl transferase group 1; SPTR: B9L6W2 Putative WalR protein; PFAM: Glycosyl transferases group 1.
 
  
 0.826
Deba_3104
Polysaccharide deacetylase; InterPro IPR011330:IPR002509; KEGG: cps:CPS_5022 polysaccharide deacetylase family protein; PFAM: polysaccharide deacetylase; SPTR: Q47U62 Polysaccharide deacetylase family protein; PFAM: Polysaccharide deacetylase.
 
     0.759
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
       0.558
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.484
Deba_0216
COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: dat:HRM2_22260 HasA; PFAM: glycosyl transferase family 2; SPTR: C0QEI2 HasA; PFAM: Glycosyl transferase family 2.
 
  
 0.479
Deba_3099
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: cag:Cagg_2207 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: B8GD23 Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2.
 
  
 0.429
Deba_2042
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: gur:Gura_2340 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: A5G401 Glycosyl transferase, family 2; PFAM: Glycosyl transferase family 2.
 
  
 0.422
Deba_1290
COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain con [...]
     
 0.417
Deba_1143
Competence/damage-inducible protein CinA; COGs: COG1546 Uncharacterized protein (competence- and mitomycin-induced); InterPro IPR001453:IPR008136:IPR008135; KEGG: gme:Gmet_0196 competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; SPTR: C8QYB6 Competence/damage-inducible protein CinA; TIGRFAM: competence/damage-inducible protein CinA; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybden [...]
 
   
 0.416
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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