Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Deba_0771TonB-dependent receptor plug; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: sat:SYN_01425 outer membrane B12 receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: C0GQ96 Outer membrane insertion C-terminal signal; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (660 aa)    
Predicted Functional Partners:
Deba_2293
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 
 0.754
Deba_1773
Outer membrane efflux protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
   
 0.657
Deba_2431
TonB family protein; InterPro IPR006260; KEGG: dvm:DvMF_2362 protein TolA; SPTR: Q726K6 TonB protein, putative; TIGRFAM: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TolA protein; TonB family C-terminal domain.
   
 
 0.561
Deba_2294
COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: dal:Dalk_3527 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: B8FC10 Biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR.
 
   
 0.492
Deba_2296
MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR017270:IPR002898; KEGG: pca:Pcar_0848 TolR-like transport protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Q3A6A3 TolR-like transport protein; PFAM: Protein of unknown function (DUF3450); MotA/TolQ/ExbB proton channel family.
 
   
 0.489
Deba_2295
MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: pca:Pcar_0847 biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Q3A6A4 Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family.
 
   
 0.479
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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