STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0793Flavodoxin; InterPro IPR008254; KEGG: sat:SYN_01229 flavodoxin; SPTR: Q2LW80 Flavodoxin; PFAM: NADPH-dependent FMN reductase. (153 aa)    
Predicted Functional Partners:
Deba_1535
Protein of unknown function DUF35; COGs: COG1545 nucleic-acid-binding protein containing a Zn-ribbon; InterPro IPR002878; KEGG: tvo:TVN1259 nucleic-acid-binding protein; PFAM: protein of unknown function DUF35; SPTR: Q978Y2 Putative uncharacterized protein TVG1322512.
  
     0.489
Deba_0792
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR000014:IPR000160:IPR001610:IPR001633:IPR 000700:IPR013767:IPR013656:IPR013655; KEGG: pap:PSPA7_0717 hypothetical protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; PAS fold-3 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: A6UZ77 Putative uncharacterized p [...]
       0.484
Deba_0879
Peptidoglycan-binding lysin domain protein; InterPro IPR018392; KEGG: tgr:Tgr7_2244 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; SPTR: C0GS09 Putative uncharacterized protein; PFAM: LysM domain.
   
  
 0.473
Deba_0794
KEGG: dma:DMR_26440 hypothetical membrane protein; SPTR: C4XUB3 Hypothetical membrane protein; PFAM: Protein of unknown function (DUF2975).
       0.463
Deba_0799
Catalase; COGs: COG0753 Catalase; InterProIPR011614:IPR020835:IPR018028:IPR010582:IPR 002226; KEGG: mbu:Mbur_0523 catalase; PFAM: Catalase related subgroup; Catalase domain protein; PRIAM: Catalase; SPTR: Q12YH1 Catalase; PFAM: Catalase; Catalase-related immune-responsive; Belongs to the catalase family.
  
  
 0.452
Deba_0795
Transcriptional regulator, XRE family; COGs: COG3655 transcriptional regulator protein; InterPro IPR001387; KEGG: glo:Glov_0100 transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; SPTR: B3E9H1 Transcriptional regulator, XRE family; PFAM: Helix-turn-helix.
       0.431
Deba_1795
KEGG: dde:Dde_0937 hypothetical protein; SPTR: C6MK62 Putative uncharacterized protein.
   
  
 0.427
Deba_2802
GCN5-related N-acetyltransferase; InterPro IPR000182:IPR016181; KEGG: sat:SYN_01678 acetyltransferase (GNAT) family protein; PFAM: GCN5-related N-acetyltransferase; SPTR: Q2LXS4 Acetyltransferase (GNAT) family protein; PFAM: Acetyltransferase (GNAT) family.
 
     0.421
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.