STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
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Coexpression
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[Homology]
Score
Deba_0796Conserved hypothetical protein; InterPro IPR020080:IPR013838; KEGG: ppd:Ppro_2085 hypothetical protein; SPTR: A1AQS3 Putative uncharacterized protein. (332 aa)    
Predicted Functional Partners:
Deba_2278
COGs: COG0681 Signal peptidase I; InterProIPR015927:IPR000223:IPR011056:IPR019756:IPR 019757:IPR019758:IPR019759; KEGG: dvm:DvMF_2718 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; PRIAM: Signal peptidase I; SPTR: B8DIZ6 Signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; Belongs to the peptidase S26 family.
   
    0.615
Deba_0383
COGs: COG0704 Phosphate uptake regulator; InterPro IPR008170:IPR002575:IPR011009; KEGG: dma:DMR_33380 hypothetical protein; PFAM: PhoU family protein; aminoglycoside phosphotransferase; SPTR: C4XK89 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF227); PhoU domain.
   
    0.545
Deba_1065
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
   
    0.545
Deba_0797
KEGG: ppd:Ppro_2085 hypothetical protein; SPTR: A1AQS3 Putative uncharacterized protein.
      
0.524
Deba_1961
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
    0.518
Deba_0795
Transcriptional regulator, XRE family; COGs: COG3655 transcriptional regulator protein; InterPro IPR001387; KEGG: glo:Glov_0100 transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; SPTR: B3E9H1 Transcriptional regulator, XRE family; PFAM: Helix-turn-helix.
       0.500
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
    0.473
Deba_0696
NAD-dependent epimerase/dehydratase; COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterProIPR010099:IPR016040:IPR001509:IPR013549:IPR 003006; KEGG: dal:Dalk_2593 domain of unknown function DUF1731; PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; SPTR: Q1NNH6 Putative uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: conserved hypothetical protein TIGR01777.
   
    0.472
tpx
Redoxin domain protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
   
    0.467
Deba_0794
KEGG: dma:DMR_26440 hypothetical membrane protein; SPTR: C4XUB3 Hypothetical membrane protein; PFAM: Protein of unknown function (DUF2975).
       0.464
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.