STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Deba_0802Putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase; COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; InterProIPR000644:IPR000595:IPR014710:IPR018490:IPR 005105:IPR018821; KEGG: tye:THEYE_A0033 putative nucleotidyltransferase family; PFAM: protein of unknown function DUF294 nucleotidyltransferase putative; CBS domain containing protein; cyclic nucleotide-binding; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; SMART: CBS domain containing protein; SPTR: B5YGV7 Putative nucleotidyltransferase [...] (643 aa)    
Predicted Functional Partners:
Deba_0803
COGs: COG2176 DNA polymerase III alpha subunit (gram-positive type); InterPro IPR006054:IPR006055:IPR012337:IPR013520; KEGG: cte:CT1039 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; SPTR: Q8KDK8 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family.
 
   
 0.948
Deba_2125
COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterProIPR003594:IPR009082:IPR004358:IPR005467:IPR 000014:IPR000700:IPR003661:IPR013163:IPR013656:IPR013767; KEGG: dat:HRM2_07890 two domain sensory box histidine kinase (methyl-accepting chemotaxis transducer/Ntr-family protein); PFAM: Cache type 2 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain cont [...]
   
 0.660
Deba_0801
Thioesterase putative; InterPro IPR006683:IPR012660; KEGG: pmy:Pmen_0555 hypothetical protein; PFAM: Thioesterase putative; thioesterase superfamily protein; SPTR: A4XPQ9 Putative uncharacterized protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; thioesterase domain, putative.
       0.518
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.499
Deba_1152
COGs: COG0069 Glutamate synthase domain 2; InterProIPR002489:IPR000583:IPR006982:IPR002932:IPR 013785:IPR017932; KEGG: ttr:Tter_0474 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein; PRIAM: Glutamate synthase (ferredoxin); SPTR: D1CEN9 Glutamate synthase (Ferredoxin); PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
     
 0.429
Deba_1290
COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain con [...]
     
 0.416
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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