STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0807Hypothetical protein; KEGG: mar:MAE_45780 magnesium protoporphyrin IX chelatase subunit D; SPTR: A8YEX0 Similar to Q4BXZ0_CROWT Magnesium chelatase. (317 aa)    
Predicted Functional Partners:
Deba_0806
Glycoside hydrolase family 3 domain protein; COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR017853; KEGG: ank:AnaeK_4399 glycoside hydrolase family 3 domain protein; PFAM: glycoside hydrolase family 3 domain protein; SPTR: Q1NXP1 Glycoside hydrolase, family 3-like; PFAM: Glycosyl hydrolase family 3 N terminal domain.
       0.789
Deba_0808
Nucleotidyl transferase; COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR011004:IPR005835:IPR018357; KEGG: ank:AnaeK_3750 nucleotidyl transferase; PFAM: Nucleotidyl transferase; SPTR: B4UE03 Nucleotidyl transferase; PFAM: Nucleotidyl transferase.
       0.526
Deba_0809
COGs: COG3178 phosphotransferase related to Ser/Thr protein kinase; InterPro IPR011009:IPR002575; KEGG: dps:DP2940 hypothetical protein; PFAM: aminoglycoside phosphotransferase; SPTR: C8QX22 Aminoglycoside phosphotransferase; PFAM: Phosphotransferase enzyme family.
       0.507
der
Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.507
Deba_0805
COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR020845; KEGG: dat:HRM2_38320 AcsA3; PFAM: AMP-dependent synthetase and ligase; SPTR: C0GH76 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme.
       0.455
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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