STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0894Phosphoesterase RecJ domain protein; COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667:IPR003156; KEGG: hmo:HM1_2316 dhh family domain protein, putative; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: B0THR6 Dhh family domain protein, putative; PFAM: DHH family; DHHA1 domain. (318 aa)    
Predicted Functional Partners:
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
  
 0.920
Deba_0981
InterPro IPR001450:IPR017900:IPR017896:IPR011802; KEGG: sfu:Sfum_1047 adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A6ZJS6 AprB (Fragment); TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: Adenosine-5'-phosphosulfate reductase beta subunit; TIGRFAM: adenosine phosphosulphate reductase, beta subunit.
    
  0.903
sat
COGs: COG2046 ATP sulfurylase (sulfate adenylyltransferase); InterPro IPR002650:IPR015947:IPR014729; KEGG: abo:ABO_0730 sulfate adenylyltransferase; PFAM: ATP-sulfurylase; PRIAM: Sulfate adenylyltransferase; SPTR: B9ZMM6 Sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase; TIGRFAM: ATP sulphurylase; Belongs to the sulfate adenylyltransferase family.
     
  0.900
Deba_0982
Dissimilatory adenylylsulfate reductase alpha subunit precursor; COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR015939:IPR003953:IPR011803; KEGG: sfu:Sfum_1048 adenylylsulfate reductase subunit alpha; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: A6ZJS7 AprA (Fragment); TIGRFAM: adenylylsulfate reductase, alpha subunit; PFAM: domain; FAD binding domain; TIGRFAM: adenosine phosphosulphate reductase, alpha subunit.
     
  0.900
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
   
 
  0.900
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
  
 0.870
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
  
 0.819
Deba_0892
Protein of unknown function DUF503; COGs: COG1550 conserved hypothetical protein; InterPro IPR007546; KEGG: drm:Dred_1275 hypothetical protein; PFAM: protein of unknown function DUF503; SPTR: A4J406 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF503).
       0.795
Deba_0890
Protein of unknown function DUF448; COGs: COG2740 nucleic-acid-binding protein implicated in transcription termination; InterPro IPR007393; KEGG: hor:Hore_07830 predicted nucleic-acid-binding protein implicated in transcription termination; PFAM: protein of unknown function DUF448; SPTR: B8DN13 Putative uncharacterized protein; manually curated; PFAM: Protein of unknown function (DUF448).
  
    0.733
nusA
Transcription termination factor NusA; Participates in both transcription termination and antitermination.
       0.720
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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