STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0907Tetratricopeptide TPR_2 repeat protein; InterProIPR019734:IPR013026:IPR011990:IPR001440:IPR 013105; KEGG: dvm:DvMF_1325 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: B8DLL2 TPR repeat-containing protein; TIGRFAM: outer membrane assembly lipoprotein YfiO. (1085 aa)    
Predicted Functional Partners:
Deba_2526
Pyrrolo-quinoline quinone; InterPro IPR015943:IPR011047:IPR002372; KEGG: dal:Dalk_4066 hypothetical protein; PFAM: Pyrrolo-quinoline quinone; SPTR: B8FM18 Putative uncharacterized protein; PFAM: PQQ enzyme repeat.
 
 
 0.926
Deba_2689
Hypothetical protein; InterPro IPR002345:IPR011990; KEGG: sti:Sthe_1174 tetratricopeptide TPR_4; SPTR: D1C2Z3 Tetratricopeptide TPR_4; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
 
  
 0.858
Deba_0839
Surface antigen (D15); COGs: COG0729 Outer membrane protein; InterPro IPR010827:IPR000184; KEGG: sfu:Sfum_0758 surface antigen (D15); PFAM: surface antigen (D15); surface antigen variable number repeat protein; SPTR: A0LGA4 Surface antigen (D15); PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
 
 
 0.815
Deba_0588
TPR repeat-containing protein; InterPro IPR001440:IPR019734:IPR011990:IPR013026; KEGG: rca:Rcas_0215 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; SPTR: A7NFW7 Tetratricopeptide TPR_2 repeat protein.
 
  
 0.808
Deba_3097
Tetratricopeptide TPR_2 repeat protein; InterProIPR001440:IPR013105:IPR019734:IPR013026:IPR 011990; KEGG: dat:HRM2_20780 tetratricopeptide (TPR) domain protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SPTR: C0QDB3 Tetratricopeptide (TPR) domain protein; PFAM: ChAPs (Chs5p-Arf1p-binding proteins); TIGRFAM: putative PEP-CTERM system TPR-repeat lipoprotein.
 
  
 0.803
Deba_3076
WD40 domain protein beta Propeller; InterPro IPR011659:IPR011042; KEGG: fsu:Fisuc_0369 WD40 domain protein beta propeller; PFAM: WD40 domain protein beta Propeller; SPTR: C9RKQ3 WD40 domain protein beta Propeller; PFAM: WD40-like Beta Propeller Repeat.
  
  
 0.792
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.791
Deba_2343
KEGG: dma:DMR_23530 hypothetical protein; SPTR: C4XT02 Putative uncharacterized protein.
  
     0.770
Deba_3244
InterPro IPR008969; KEGG: hypothetical protein; SPTR: B7G5I9 Predicted protein.
  
     0.765
Deba_2348
KEGG: dde:Dde_0564 hypothetical protein; SPTR: Q315N1 Putative uncharacterized protein.
  
     0.764
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.