STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0928Protein of unknown function DUF167; COGs: COG1872 conserved hypothetical protein; InterPro IPR003746; KEGG: dae:Dtox_1088 protein of unknown function DUF167; PFAM: protein of unknown function DUF167; SPTR: C8W4A6 Putative uncharacterized protein; PFAM: Uncharacterised ACR, YggU family COG1872; TIGRFAM: conserved hypothetical protein TIGR00251; Belongs to the UPF0235 family. (95 aa)    
Predicted Functional Partners:
Deba_0929
DivIVA domain protein; InterPro IPR007793:IPR019933; KEGG: dsa:Desal_2401 DivIVA family protein; PFAM: DivIVA family protein; SPTR: C0GMA7 DivIVA family protein; TIGRFAM: DivIVA domain; PFAM: DivIVA protein; TIGRFAM: DivIVA domain.
  
  
 0.797
Deba_0927
KEGG: hoh:Hoch_4871 hypothetical protein; SPTR: A6G4G1 Putative uncharacterized protein.
       0.791
Deba_2203
Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
 
  
 0.449
Deba_0511
Protein of unknown function YGGT; InterPro IPR003425; KEGG: pmx:PERMA_1227 YGGT family protein; PFAM: protein of unknown function YGGT; SPTR: A6DA20 YGGT family protein; PFAM: YGGT family.
 
  
 0.430
Deba_0930
NUDIX hydrolase; InterPro IPR015797:IPR000086; KEGG: rde:RD1_0410 hydrolase, putative; PFAM: NUDIX hydrolase; SPTR: Q16D17 Hydrolase, putative; PFAM: NUDIX domain.
       0.402
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.