STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0962Protein of unknown function DUF500; COGs: COG2930 conserved hypothetical protein; InterPro IPR007461; KEGG: xac:XAC4219 hypothetical protein; PFAM: protein of unknown function DUF500; SPTR: Q8PEX1 Putative uncharacterized protein; PFAM: Family of unknown function (DUF500). (236 aa)    
Predicted Functional Partners:
Deba_0963
TPR repeat-containing protein; InterPro IPR001440:IPR011990:IPR019734:IPR013026; KEGG: ami:Amir_6259 NB-ARC domain protein; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: C6WIY7 NB-ARC domain protein; PFAM: Tetratricopeptide repeat.
       0.790
Deba_0964
Protein of unknown function UPF0047; COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: pth:PTH_0986 hypothetical protein; PFAM: protein of unknown function UPF0047; SPTR: A5D3M9 Uncharacterized conserved protein; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: conserved hypothetical protein TIGR00149.
       0.732
Deba_0333
Protein of unknown function DUF1458; InterPro IPR009923; KEGG: jan:Jann_3624 hypothetical protein; PFAM: protein of unknown function DUF1458; SPTR: A4EEU5 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1458).
  
    0.679
glmS
Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
    0.619
Deba_3085
Polysaccharide export protein; COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715:IPR019554; KEGG: gur:Gura_2582 polysaccharide export protein; PFAM: polysaccharide export protein; Soluble ligand binding domain; SPTR: A5G4P2 Polysaccharide export protein; PFAM: Polysaccharide biosynthesis/export protein; SLBB domain.
   
    0.618
Deba_2969
KEGG: bcv:Bcav_3932 hypothetical protein; SPTR: C5C533 Putative uncharacterized protein.
    
 
 0.541
Deba_0965
COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sat:SYN_02143 Zn-dependent hydrolases; SPTR: Q2LSA2 Zn-dependent hydrolases; PFAM: Metallo-beta-lactamase superfamily.
       0.495
Deba_0306
ABC transporter related protein; COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: bja:bll3651 O-antigen export system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q89P32 RfbA protein; PFAM: ABC transporter.
   
    0.480
Deba_0454
ABC transporter related protein; COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: mxa:MXAN_4622 O-antigen ABC exporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q1D3I3 O-antigen ABC exporter, ATP-binding protein; PFAM: ABC transporter.
   
    0.480
Deba_0307
ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525; KEGG: cef:CE0178 putative O-antigen export system permease protein; PFAM: ABC-2 type transporter; SPTR: C0XTW7 ABC superfamily ATP binding cassette transporter, permease protein; manually curated; PFAM: ABC-2 type transporter.
   
    0.463
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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