STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0971Short-chain dehydrogenase/reductase SDR; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347:IPR002198:IPR016040; KEGG: dat:HRM2_45260 FabG9; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C0QF81 FabG9; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (264 aa)    
Predicted Functional Partners:
Deba_0969
Propanoyl-CoA C-acyltransferase; COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR016039:IPR016038:IPR002155; KEGG: dat:HRM2_45290 AtoB5; PRIAM: Propanoyl-CoA C-acyltransferase; SPTR: D1JF94 Putative thiolase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.785
Deba_2386
3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
 0.745
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
  
 
 0.713
Deba_0972
COGs: COG1960 Acyl-CoA dehydrogenase; InterProIPR009100:IPR009075:IPR006092:IPR006091:IPR 006090:IPR006089:IPR013786:IPR013764; KEGG: afu:AF0436 acyl-CoA dehydrogenase (acd-2); PFAM: acyl-CoA dehydrogenase domain protein; SPTR: B9ZGA7 Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain.
  
 0.695
Deba_0970
Protein of unknown function DUF35; COGs: COG1545 nucleic-acid-binding protein containing a Zn-ribbon; InterPro IPR002878; KEGG: afu:AF1292 hypothetical protein; PFAM: protein of unknown function DUF35; SPTR: O28977 Putative uncharacterized protein; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); DUF35 OB-fold domain.
     
 0.680
Deba_0400
Conserved hypothetical protein; InterPro IPR011009:IPR000719; KEGG: dsa:Desal_2316 hypothetical protein; SPTR: C6BWU2 Putative uncharacterized protein.
    
 0.679
Deba_1955
COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterProIPR014043:IPR016035:IPR016036:IPR001227:IPR 004410; KEGG: dal:Dalk_3440 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; SPTR: B8FLI2 Malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase.
 
 
 0.669
Deba_3227
COGs: COG0778 Nitroreductase; InterPro IPR000415:IPR001450:IPR017896:IPR017900; KEGG: dma:DMR_23050 nitroreductase family protein; PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C4XSV4 Nitroreductase family protein; PFAM: Nitroreductase family; 4Fe-4S binding domain.
 
 
 0.642
Deba_0968
Transcriptional regulator, TetR family; InterPro IPR001647:IPR009057:IPR012287; KEGG: dat:HRM2_21660 HTH-type transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C0QDK0 HTH-type transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family.
     
 0.632
Deba_2969
KEGG: bcv:Bcav_3932 hypothetical protein; SPTR: C5C533 Putative uncharacterized protein.
   
 0.624
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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