STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Deba_0989COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: azc:AZC_1520 glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: A8HXN1 Glycosyltransferase; PFAM: Glycosyl transferases group 1. (609 aa)    
Predicted Functional Partners:
Deba_0990
InterPro IPR001173; KEGG: azc:AZC_1521 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: A8HXN4 Glycosyltransferase; PFAM: Glycosyl transferase family 2.
    0.964
Deba_0992
COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: ter:Tery_4437 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Q10WF0 Glycosyl transferase, family 2; PFAM: Glycosyl transferase family 2.
 
    0.704
Deba_0995
COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: mag:amb1074 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Q2W8E7 Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2.
 
  
 0.696
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.675
Deba_0991
TPR repeat-containing protein; InterPro IPR001440:IPR011990:IPR019734:IPR013026; KEGG: ter:Tery_2862 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; SPTR: Q4CAF1 TPR repeat:Sel1-like repeat:Sel1-like repeat; TIGRFAM: pentatricopeptide repeat domain (PPR motif).
       0.642
Deba_0994
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR001509; KEGG: dvm:DvMF_2922 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: B9BAZ3 UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family.
  
  
 0.621
Deba_0993
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: hau:Haur_2165 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: A2BD23 WsbJ; PFAM: Glycosyl transferases group 1.
       0.582
Deba_0455
Undecaprenyl-phosphate glucose phosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR016040:IPR017473:IPR017475; KEGG: mxa:MXAN_2922 sugar transferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Q1PWC3 Similar to capsular polysaccharide synthesis protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; e [...]
  
  
 0.554
Deba_2291
COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR011051:IPR014710:IPR000888; KEGG: sat:SYN_00576 dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: Q2LVW0 DTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: WxcM-like, C-terminal.
  
  
 0.475
Deba_1678
Polysaccharide biosynthesis protein; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797:IPR002229; KEGG: gbm:Gbem_1791 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: B5EAA1 Polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein.
  
  
 0.474
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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