STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1005COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rxy:Rxyl_3107 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Q1ARG4 Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1. (409 aa)    
Predicted Functional Partners:
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.675
Deba_1004
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: fjo:Fjoh_1898 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: C3FB30 Glycosyl transferase, group 2; PFAM: Glycosyl transferase family 2.
 
  
 0.675
Deba_0455
Undecaprenyl-phosphate glucose phosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR016040:IPR017473:IPR017475; KEGG: mxa:MXAN_2922 sugar transferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Q1PWC3 Similar to capsular polysaccharide synthesis protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; e [...]
 
  
 0.621
Deba_2084
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rrs:RoseRS_0847 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: A5URK7 Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1.
  
     0.524
Deba_0612
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: mxa:MXAN_2920 glycosyl transferase, group 1 family protein; PFAM: glycosyl transferase group 1; SPTR: Q1D892 Glycosyl transferase, group 1 family protein; PFAM: Glycosyl transferases group 1.
 
     0.500
Deba_0306
ABC transporter related protein; COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: bja:bll3651 O-antigen export system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q89P32 RfbA protein; PFAM: ABC transporter.
 
 
 0.497
Deba_0613
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rrs:RoseRS_3332 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: A5UYJ0 Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1.
 
     0.479
Deba_0451
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sti:Sthe_0904 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: D1C274 Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1.
  
     0.475
Deba_2291
COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR011051:IPR014710:IPR000888; KEGG: sat:SYN_00576 dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: Q2LVW0 DTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: WxcM-like, C-terminal.
  
  
 0.475
Deba_1678
Polysaccharide biosynthesis protein; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797:IPR002229; KEGG: gbm:Gbem_1791 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: B5EAA1 Polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein.
  
  
 0.474
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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