STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1015ABC transporter substrate binding protein precursor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; KEGG: dma:DMR_09050 ABC transporter substrate binding protein precursor; SPTR: C4XK41 ABC transporter substrate binding protein. (388 aa)    
Predicted Functional Partners:
Deba_1014
Inner-membrane translocator; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: dba:Dbac_2284 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C7LQG4 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component.
 
  
 0.928
Deba_2365
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: dal:Dalk_3502 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: B8FBY5 Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region.
  
  
 
0.924
Deba_2869
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: dal:Dalk_3502 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: B8FBY5 Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region.
  
  
 
0.924
Deba_1016
ABC transporter related protein; COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: cag:Cagg_2428 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B8G3C8 ABC transporter related; PFAM: ABC transporter.
 
  
 0.923
Deba_2060
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: tye:THEYE_A0768 leu/ile/val-binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: Q649G6 Putative uncharacterized protein; PFAM: Receptor family ligand binding region.
  
  
  0.921
Deba_1303
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: dvl:Dvul_0562 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: Q727W0 High-affinity branched-chain amino acid ABC transporter, perisplasmic amino acid binding protein; PFAM: Receptor family ligand binding region.
  
  
  0.916
Deba_1013
Inner-membrane translocator; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: adg:Adeg_1596 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: C9R8R2 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component.
 
  
 0.913
Deba_0173
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: sfu:Sfum_3400 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: A0LNS1 Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region.
     
  0.900
Deba_0639
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR000709:IPR001828; KEGG: geo:Geob_3442 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: B9M5M6 Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region.
     
  0.900
Deba_0640
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828; KEGG: app:CAP2UW1_2211 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: C7RP21 Extracellular ligand-binding receptor; PFAM: Receptor family ligand binding region.
     
  0.900
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.