STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1033COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: tro:trd_1593 dTDP-Rha:a-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase; PFAM: glycosyl transferase family 2; SPTR: Q2BI24 Teichoic acid biosynthesis protein; PFAM: Glycosyl transferase family 2. (295 aa)    
Predicted Functional Partners:
Deba_3097
Tetratricopeptide TPR_2 repeat protein; InterProIPR001440:IPR013105:IPR019734:IPR013026:IPR 011990; KEGG: dat:HRM2_20780 tetratricopeptide (TPR) domain protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SPTR: C0QDB3 Tetratricopeptide (TPR) domain protein; PFAM: ChAPs (Chs5p-Arf1p-binding proteins); TIGRFAM: putative PEP-CTERM system TPR-repeat lipoprotein.
  
 
 0.829
Deba_1290
COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain con [...]
  
 
 0.819
Deba_1034
Radical SAM domain protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006158:IPR007197:IPR013785:IPR006638; KEGG: dol:Dole_1742 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: A9A0S1 Radical SAM domain protein; PFAM: Radical SAM superfamily; B12 binding domain.
     
 0.786
Deba_1035
Hypothetical protein; KEGG: sit:TM1040_1022 L-glutamine synthetase; SPTR: C9D3W7 Glutamine synthetase, type I.
       0.773
Deba_0712
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bav:BAV2236 lipopolysaccharide core biosynthesis glycosyl transferase; PFAM: glycosyl transferase family 2; SPTR: Q2KYR6 Lipopolysaccharide core biosynthesis glycosyl transferase; PFAM: Glycosyl transferase family 2.
 
 
 0.744
Deba_0503
Diguanylate cyclase/phosphodiesterase; COGs: COG2200 FOG: EAL domain; InterPro IPR001633:IPR000644:IPR000160; KEGG: drt:Dret_0176 diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; CBS domain containing protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; SPTR: C8WZK3 Diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain; CBS domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
  
  
 0.714
Deba_0713
COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR011330:IPR002509; KEGG: sco:SCO2710 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Q9KYG2 Putative polysaccharide deacetylase; PFAM: Polysaccharide deacetylase.
 
  
 0.695
Deba_2353
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR011990:IPR013026:IPR001173:IPR011717; KEGG: sat:SYN_02803 glycosyltransferase; PFAM: glycosyl transferase family 2; Tetratricopeptide TPR_4; SPTR: Q1Q1I3 Putative uncharacterized protein; PFAM: Glycosyl transferase family 2.
 
 
 0.686
Deba_3176
Creatininase; COGs: COG1402 Uncharacterized protein putative amidase; InterPro IPR003785; KEGG: sfu:Sfum_0661 creatininase; PFAM: Creatininase; SPTR: A0LG08 Creatininase; PFAM: Creatinine amidohydrolase.
  
  
 0.686
Deba_2096
Polysaccharide deacetylase; InterPro IPR002509:IPR011330; KEGG: gme:Gmet_0882 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Q39XA0 Polysaccharide deacetylase; PFAM: Polysaccharide deacetylase.
 
  
 0.685
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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