STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1035Hypothetical protein; KEGG: sit:TM1040_1022 L-glutamine synthetase; SPTR: C9D3W7 Glutamine synthetase, type I. (387 aa)    
Predicted Functional Partners:
Deba_1033
COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: tro:trd_1593 dTDP-Rha:a-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase; PFAM: glycosyl transferase family 2; SPTR: Q2BI24 Teichoic acid biosynthesis protein; PFAM: Glycosyl transferase family 2.
       0.773
Deba_1034
Radical SAM domain protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006158:IPR007197:IPR013785:IPR006638; KEGG: dol:Dole_1742 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: A9A0S1 Radical SAM domain protein; PFAM: Radical SAM superfamily; B12 binding domain.
       0.773
Deba_1032
Radical SAM domain protein; InterPro IPR007197; KEGG: cbh:CLC_2585 hypothetical protein; PFAM: Radical SAM domain protein; SPTR: A7FQ13 Putative uncharacterized protein; PFAM: Radical SAM superfamily.
       0.615
Deba_1031
COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR011004:IPR001451:IPR018357; KEGG: ade:Adeh_4281 acetyltransferase; SPTR: Q2IHI8 Acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats).
       0.536
Deba_1030
Hypothetical protein; InterPro IPR019809; KEGG: mtp:Mthe_1067 methyltransferase type 11; SPTR: A0B827 Methyltransferase type 11.
       0.507
Deba_1027
COGs: COG2089 Sialic acid synthase; InterPro IPR006190:IPR013132:IPR013974:IPR013785; KEGG: fnu:FN1684 N-acetylneuraminate synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; PRIAM: N-acetylneuraminate synthase; SPTR: A3Z4G4 N-acetylneuraminate synthase; PFAM: SAF domain; NeuB family.
       0.455
Deba_1028
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sye:Syncc9902_0083 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Q2BI18 Glycosyltransferase; PFAM: Glycosyl transferase family 2.
       0.455
Deba_1029
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: sye:Syncc9902_0043 methylase involved in ubiquinone/menaquinone biosynthesis-like; PFAM: Methyltransferase type 11; SPTR: Q3B0W0 Methylase involved in ubiquinone/menaquinone biosynthesis-like; PFAM: Methyltransferase domain.
       0.455
Deba_1026
NAD-dependent epimerase/dehydratase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
       0.447
Deba_1024
Acylneuraminate cytidylyltransferase; COGs: COG1861 Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase homolog; InterPro IPR003329; KEGG: rpf:Rpic12D_0583 acylneuraminate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; SPTR: C6BDF3 Acylneuraminate cytidylyltransferase; PFAM: Cytidylyltransferase.
       0.434
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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