STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1050COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: rxy:Rxyl_3119 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Q1ARF2 Glycosyl transferase, family 2; PFAM: Glycosyl transferase family 2. (298 aa)    
Predicted Functional Partners:
Deba_0455
Undecaprenyl-phosphate glucose phosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR016040:IPR017473:IPR017475; KEGG: mxa:MXAN_2922 sugar transferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Q1PWC3 Similar to capsular polysaccharide synthesis protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; e [...]
 
  
 0.793
Deba_2289
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
 
  
 0.752
Deba_1026
NAD-dependent epimerase/dehydratase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
 
  
 0.685
Deba_3303
ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525:IPR000412; KEGG: mxa:MXAN_4623 O-antigen ABC exporter, permease protein; PFAM: ABC-2 type transporter; SPTR: Q094Z0 O-antigen export system permease protein RfbA; PFAM: ABC-2 type transporter.
 
  
 0.676
Deba_0307
ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525; KEGG: cef:CE0178 putative O-antigen export system permease protein; PFAM: ABC-2 type transporter; SPTR: C0XTW7 ABC superfamily ATP binding cassette transporter, permease protein; manually curated; PFAM: ABC-2 type transporter.
 
  
 0.671
Deba_0712
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bav:BAV2236 lipopolysaccharide core biosynthesis glycosyl transferase; PFAM: glycosyl transferase family 2; SPTR: Q2KYR6 Lipopolysaccharide core biosynthesis glycosyl transferase; PFAM: Glycosyl transferase family 2.
 
  
 0.643
Deba_0306
ABC transporter related protein; COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: bja:bll3651 O-antigen export system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q89P32 RfbA protein; PFAM: ABC transporter.
 
  
 0.559
Deba_0454
ABC transporter related protein; COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: mxa:MXAN_4622 O-antigen ABC exporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q1D3I3 O-antigen ABC exporter, ATP-binding protein; PFAM: ABC transporter.
 
  
 0.554
Deba_2288
dTDP-glucose 4,6-dehydratase; COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR016040:IPR002198:IPR001509:IPR005888; KEGG: rpd:RPD_1571 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: Q13AT1 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.535
Deba_0993
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: hau:Haur_2165 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: A2BD23 WsbJ; PFAM: Glycosyl transferases group 1.
 
  
 0.518
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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