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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1101LIM zinc-binding protein; InterPro IPR001781; KEGG: dat:HRM2_33650 hypothetical protein; PFAM: LIM zinc-binding protein; SPTR: B2DD80 Putative uncharacterized protein; PFAM: LIM domain. (119 aa)    
Predicted Functional Partners:
Deba_3028
KEGG: dat:HRM2_34640 hypothetical protein; SPTR: C0Q934 Putative uncharacterized protein.
  
     0.714
Deba_0680
KEGG: dat:HRM2_47730 hypothetical protein; SPTR: C0QHG3 Putative uncharacterized protein.
  
     0.671
Deba_2143
KEGG: sfu:Sfum_1719 hypothetical protein; SPTR: Q1NV86 Putative uncharacterized protein.
  
     0.639
Deba_0872
KEGG: dal:Dalk_2588 hypothetical protein; SPTR: B8FIP0 Putative uncharacterized protein.
  
     0.630
Deba_0079
KEGG: dat:HRM2_34640 hypothetical protein; SPTR: B2DD79 Putative uncharacterized protein.
  
     0.611
Deba_0225
KEGG: dol:Dole_2869 hypothetical protein; SPTR: A8ZYE7 Putative uncharacterized protein.
  
     0.585
Deba_1081
RNA-binding protein, predicted; InterPro IPR019300; KEGG: tye:THEYE_A0086 hypothetical protein; PFAM: RNA-binding protein, predicted; SPTR: B5YHB6 Putative uncharacterized protein; PFAM: Predicted RNA-binding protein.
  
     0.578
Deba_1102
KEGG: pag:PLES_09601 hypothetical protein; SPTR: A8W867 Outer membrane transport barrel.
       0.566
Deba_2039
KEGG: sfu:Sfum_4098 hypothetical protein; SPTR: A0LQR1 Putative uncharacterized protein.
  
     0.546
Deba_1100
Two component, sigma54 specific, transcriptional regulator, Fis family; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterProIPR011006:IPR009057:IPR001789:IPR002078:IPR 002197:IPR003593; KEGG: acp:A2cp1_0976 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: B8JEK1 Sensor protein; PFAM: Response regulator receiver domain; Sigma-54 interact [...]
       0.543
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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