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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1122Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dal:Dalk_5103 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: D1JGD8 Putative uncharacterized protein; PFAM: Methyltransferase domain. (218 aa)    
Predicted Functional Partners:
Deba_1123
InterPro IPR016196:IPR011701; KEGG: amr:AM1_A0171 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: A8ZKH8 Major facilitator superfamily transporter, putative; PFAM: Major Facilitator Superfamily.
     
 0.776
Deba_3078
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: pmh:P9215_04251 methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase type 11; SPTR: A8G360 Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
  
     0.708
Deba_1194
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: gvi:glr2042 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Q7NIZ0 Glr2042 protein; PFAM: Methyltransferase domain.
  
     0.681
Deba_1121
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dal:Dalk_0342 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: C1SI40 Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
       0.634
Deba_0406
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dal:Dalk_0098 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: B8FKJ3 Methyltransferase type 11; PFAM: Methyltransferase domain.
  
     0.478
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
  
     0.472
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.465
Deba_1120
PBS lyase HEAT domain protein repeat-containing protein; InterProIPR016024:IPR004155:IPR000357:IPR011989:IPR 000225; KEGG: mba:Mbar_A1826 hypothetical protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; HEAT domain containing protein; SPTR: A0ZHQ4 Putative uncharacterized protein; PFAM: PBS lyase HEAT-like repeat.
 
     0.425
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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