STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1145Methyltransferase type 12; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. (276 aa)    
Predicted Functional Partners:
Deba_1622
COGs: COG0430 RNA 3'-terminal phosphate cyclase; InterPro IPR013792:IPR000228:IPR013796; KEGG: pcl:Pcal_2009 RNA 3'-terminal-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase; RNA 3'-terminal phosphate cyclase insert region; PRIAM: RNA-3'-phosphate cyclase; SPTR: A3MXQ7 Probable RNA 3'-terminal phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase (RTC), insert domain; RNA 3'-terminal phosphate cyclase; TIGRFAM: RNA 3'-phosphate cyclase.
  
    0.843
Deba_3267
PP-loop domain protein; COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR011063:IPR012089:IPR014729; KEGG: sfu:Sfum_0716 PP-loop domain-containing protein; PFAM: PP-loop domain protein; SPTR: C6I155 Probable ATPase, PP-loop superfamily protein; PFAM: PP-loop family; Belongs to the TtcA family.
 
  
 0.792
rpmD
COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR000517:IPR005996:IPR016082; KEGG: hoh:Hoch_3987 ribosomal protein L30; PFAM: ribosomal protein L30; SPTR: D0LIA7 Ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle.
   
   0.775
trmB
Putative methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
 
 0.764
rlmE
Ribosomal RNA methyltransferase RrmJ/FtsJ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
   
  
 0.749
Deba_1144
Protein of unknown function DUF1178; COGs: COG5319 conserved hypothetical protein; InterPro IPR009562; KEGG: dal:Dalk_4330 protein of unknown function DUF1178; PFAM: protein of unknown function DUF1178; SPTR: B8FMH2 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1178).
       0.701
Deba_1933
RNA methyltransferase, TrmA family; COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR010280:IPR002792:IPR016027:IPR001566; KEGG: ppd:Ppro_1783 RNA methyltransferase; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; SPTR: A1APX5 RNA methyltransferase, TrmA family; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: TRAM domain; tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltran [...]
   
  
 0.667
Deba_2222
KEGG: fre:Franean1_5789 hypothetical protein; SPTR: A8L8L9 Putative uncharacterized protein; PFAM: RNA cap guanine-N2 methyltransferase.
   
  
 0.667
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
  
 0.631
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
  
 0.561
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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