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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1149InterPro IPR010239; KEGG: dol:Dole_0109 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: C8QW49 Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (Gcw_chp); TIGRFAM: conserved hypothetical protein, proteobacterial. (258 aa)    
Predicted Functional Partners:
Deba_1148
Ammonium transporter; COGs: COG0004 Ammonia permease; InterPro IPR002229:IPR001905:IPR018047; KEGG: tnp:Tnap_0194 ammonium transporter; PFAM: ammonium transporter; SPTR: B1L988 Ammonium transporter; TIGRFAM: ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter.
       0.614
Deba_1147
COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187:IPR011322:IPR015867; KEGG: drt:Dret_0112 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: C8WZD9 Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II.
       0.578
Deba_1150
Transcriptional regulator, NifA subfamily, Fis Family; COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterProIPR020441:IPR009057:IPR003018:IPR002078:IPR 002197:IPR010113:IPR003593; KEGG: cts:Ctha_1655 transcriptional regulator, NifA, fis family; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: GAF domain protein; AAA ATPase; SPTR: Q8KC95 Nitrogen fixation specific regulatory protein nifA; TIGRFAM: Nif-specific regulatory protein; PFAM: GAF domain; Bacterial regulatory pro [...]
       0.429
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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