STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1187KEGG: ppd:Ppro_1942 hypothetical protein; SPTR: A1AQD1 Putative uncharacterized protein. (430 aa)    
Predicted Functional Partners:
Deba_1188
KEGG: ppd:Ppro_1941 hypothetical protein; SPTR: A1AQD0 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1329).
 
    0.951
Deba_1189
COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000731; KEGG: ppd:Ppro_1940 RND efflux transporter; SPTR: A1AQC9 Exporters of the RND superfamily; PFAM: MMPL family.
 
   
 0.909
Deba_2247
KEGG: tde:TDE2009 hypothetical protein; SPTR: C1SMG9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1329).
 
    0.756
Deba_2835
KEGG: dol:Dole_0396 hypothetical protein; SPTR: A8ZT42 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1329).
 
    0.731
Deba_2249
MMPL domain protein; COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000731:IPR004869; KEGG: dol:Dole_0610 exporter of the RND superfamily protein-like protein; PFAM: MMPL domain protein; SPTR: B6WQE3 Putative uncharacterized protein; PFAM: MMPL family.
 
   
 0.693
Deba_2821
KEGG: fsu:Fisuc_0003 hypothetical protein; SPTR: C9RIX4 Putative uncharacterized protein.
 
    0.681
Deba_1608
COGs: COG2842 Uncharacterized ATPase putative transposase; KEGG: dvu:DVU1139 bacteriophage DNA transposition B protein, putative; SPTR: Q72CZ2 Bacteriophage DNA transposition B protein, putative.
  
 
 0.668
Deba_2836
Patched family protein; COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR003392:IPR000731; KEGG: dal:Dalk_0753 patched family protein; PFAM: Patched family protein; SPTR: B8FHP1 Patched family protein; PFAM: Patched family; MMPL family.
 
   
 0.614
Deba_2820
COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000731; KEGG: hor:Hore_08450 efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family; SPTR: B8CWD3 Efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family; PFAM: MMPL family; TIGRFAM: The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family.
 
   
 0.593
Deba_1186
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: mba:Mbar_A2392 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Q469Y0 Putative uncharacterized protein; PFAM: Methyltransferase domain.
       0.551
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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