STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1189COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000731; KEGG: ppd:Ppro_1940 RND efflux transporter; SPTR: A1AQC9 Exporters of the RND superfamily; PFAM: MMPL family. (821 aa)    
Predicted Functional Partners:
Deba_1187
KEGG: ppd:Ppro_1942 hypothetical protein; SPTR: A1AQD1 Putative uncharacterized protein.
 
   
 0.910
Deba_2835
KEGG: dol:Dole_0396 hypothetical protein; SPTR: A8ZT42 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1329).
  
 0.910
Deba_1188
KEGG: ppd:Ppro_1941 hypothetical protein; SPTR: A1AQD0 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1329).
 
  
 0.909
Deba_2247
KEGG: tde:TDE2009 hypothetical protein; SPTR: C1SMG9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1329).
 
  
 0.793
Deba_2821
KEGG: fsu:Fisuc_0003 hypothetical protein; SPTR: C9RIX4 Putative uncharacterized protein.
 
  
 0.781
Deba_1190
InterPro IPR000835:IPR011991; KEGG: ppd:Ppro_1939 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: A1AQC8 Transcriptional regulator, MarR family; PFAM: MarR family.
 
     0.654
Deba_2822
KEGG: fsu:Fisuc_0005 hypothetical protein; SPTR: C9RIX6 Putative uncharacterized protein.
 
   
 0.566
Deba_2250
KEGG: pgn:PGN_1918 hypothetical protein; SPTR: C1SMH0 Putative uncharacterized protein.
 
   
 0.451
Deba_1186
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: mba:Mbar_A2392 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Q469Y0 Putative uncharacterized protein; PFAM: Methyltransferase domain.
       0.421
Deba_2182
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dal:Dalk_1444 efflux transporter, RND family, MFP subunit; SPTR: B8FA48 Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.420
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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