STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1194Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: gvi:glr2042 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Q7NIZ0 Glr2042 protein; PFAM: Methyltransferase domain. (273 aa)    
Predicted Functional Partners:
Deba_3078
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: pmh:P9215_04251 methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase type 11; SPTR: A8G360 Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
  
     0.687
Deba_1122
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dal:Dalk_5103 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: D1JGD8 Putative uncharacterized protein; PFAM: Methyltransferase domain.
  
     0.681
Deba_0098
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: dal:Dalk_5103 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: D1JG71 Putative uncharacterized protein; PFAM: Methyltransferase domain.
  
     0.607
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
  
     0.563
Deba_1186
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: mba:Mbar_A2392 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Q469Y0 Putative uncharacterized protein; PFAM: Methyltransferase domain.
  
     0.557
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.465
Deba_1195
Cobalamin synthesis protein P47K; COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; InterPro IPR003495:IPR012202; KEGG: ppd:Ppro_0345 cobalamin synthesis protein, P47K; PFAM: cobalamin synthesis protein P47K; SPTR: A1AKV9 Cobalamin synthesis protein, P47K; PFAM: CobW/HypB/UreG, nucleotide-binding domain.
     
 0.434
Deba_1201
ABC transporter related protein; COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: pca:Pcar_0855 ABC-type transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q3A697 ABC-type transport system, ATPase component; PFAM: ABC transporter.
  
  
 0.432
Deba_1197
Hypothetical protein; KEGG: swo:Swol_1685 ABC-type Fe3+ transport system periplasmic component-like protein; SPTR: Q0AWC1 ABC-type Fe3+ transport system periplasmic component-like protein.
       0.415
Deba_1193
COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: tgr:Tgr7_1963 putative methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: Q1NWX2 Chemotaxis sensory transducer; PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain.
       0.414
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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