STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1221Protein of unknown function DUF107; COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: tye:THEYE_A0592 membrane-bound serine protease; PFAM: protein of unknown function DUF107; SPTR: B5YJM0 Membrane-bound serine protease; PFAM: Clp protease; NfeD-like. (441 aa)    
Predicted Functional Partners:
Deba_1222
Band 7 protein; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107:IPR001972; KEGG: sfu:Sfum_0464 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: A0LFG2 SPFH domain, Band 7 family protein; PFAM: SPFH domain / Band 7 family.
 
  
 0.970
Deba_1219
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
       0.703
Deba_1220
Phage SPO1 DNA polymerase-related protein; COGs: COG1573 Uracil-DNA glycosylase; InterPro IPR005122:IPR005273; KEGG: hoh:Hoch_5015 phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; SPTR: D0LVE3 Phage SPO1 DNA polymerase-related protein; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4.
       0.703
Deba_1218
KEGG: dal:Dalk_4409 putative lipoprotein; SPTR: B8FNB9 Putative lipoprotein.
       0.689
Deba_1217
COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: gsu:GSU2525 nitroreductase family protein; PFAM: nitroreductase; SPTR: Q74A65 Nitroreductase family protein; PFAM: Nitroreductase family.
       0.616
Deba_1223
KEGG: dal:Dalk_0401 hypothetical protein; SPTR: B8FH22 Putative uncharacterized protein; PFAM: Rho termination factor, N-terminal domain.
       0.591
Deba_2397
HflK protein; HflC and HflK could encode or regulate a protease.
  
  
 0.435
Deba_2398
HflC protein; HflC and HflK could regulate a protease.
  
  
 0.435
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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