Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1238Protein of unknown function DUF399; COGs: COG3016 Uncharacterized iron-regulated protein; InterPro IPR007314:IPR001478; KEGG: sfu:Sfum_2732 hypothetical protein; PFAM: protein of unknown function DUF399; SMART: PDZ/DHR/GLGF domain protein; SPTR: A0LLV8 Putative uncharacterized protein; PFAM: Protein of unknown function, DUF399; PDZ domain (Also known as DHR or GLGF). (388 aa)    
Predicted Functional Partners:
Deba_1290
COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain con [...]
  
  
 0.833
Deba_1236
OmpA/MotB domain protein; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: dat:HRM2_28640 MotB2; PFAM: OmpA/MotB domain protein; SPTR: C0QJD9 MotB2; PFAM: OmpA family.
   
   0.759
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.742
Deba_3097
Tetratricopeptide TPR_2 repeat protein; InterProIPR001440:IPR013105:IPR019734:IPR013026:IPR 011990; KEGG: dat:HRM2_20780 tetratricopeptide (TPR) domain protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SPTR: C0QDB3 Tetratricopeptide (TPR) domain protein; PFAM: ChAPs (Chs5p-Arf1p-binding proteins); TIGRFAM: putative PEP-CTERM system TPR-repeat lipoprotein.
 
 
 0.690
Deba_1237
MotA/TolQ/ExbB proton channel; COGs: COG1291 Flagellar motor component; InterPro IPR002898:IPR000540; KEGG: dma:DMR_12670 chemotaxis protein MotA; PFAM: MotA/TolQ/ExbB proton channel; SPTR: C0GN88 MotA/TolQ/ExbB proton channel; manually curated; PFAM: MotA/TolQ/ExbB proton channel family.
  
    0.689
Deba_1235
Type IV pilus assembly PilZ; InterPro IPR009875; KEGG: hypothetical protein; PFAM: type IV pilus assembly PilZ; SPTR: C3Y8B3 Putative uncharacterized protein; PFAM: PilZ domain.
       0.675
Deba_2969
KEGG: bcv:Bcav_3932 hypothetical protein; SPTR: C5C533 Putative uncharacterized protein.
   
 0.634
Deba_2761
Phage shock protein C, PspC; InterPro IPR007168:IPR014320; KEGG: dba:Dbac_1223 phage shock protein C, PspC; PFAM: PspC domain protein; SPTR: C7LRU3 Phage shock protein C, PspC; TIGRFAM: phage shock protein C; PFAM: PspC domain; TIGRFAM: phage shock protein C.
  
  
 0.605
Deba_3134
Short-chain dehydrogenase/reductase SDR; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterProIPR016040:IPR016083:IPR002539:IPR002198:IPR 003033:IPR002347; KEGG: dal:Dalk_3192 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; MaoC domain protein dehydratase; Sterol-binding domain protein; SPTR: B8FGH3 Short-chain dehydrogenase/reductase SDR; PFAM: MaoC like domain; short chain dehydrogenase; SCP-2 sterol transfer family.
   
 0.605
Deba_1083
InterPro IPR000620; KEGG: gur:Gura_2208 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: A5G3M5 Putative uncharacterized protein; PFAM: EamA-like transporter family.
  
     0.576
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.