STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1265KEGG: dba:Dbac_1912 hypothetical protein; SPTR: C7LXD2 Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2325). (305 aa)    
Predicted Functional Partners:
Deba_2081
O-antigen polymerase; InterPro IPR018271:IPR007016; KEGG: tye:THEYE_A0427 O-antigen polymerase family; PFAM: O-antigen polymerase; SPTR: B5YJ59 O-Antigen Polymerase family; PFAM: O-Antigen ligase.
 
  
 0.770
Deba_3093
O-antigen polymerase; InterPro IPR007016; KEGG: hoh:Hoch_0024 O-antigen polymerase; PFAM: O-antigen polymerase; SPTR: C1ZFT0 O-Antigen Polymerase; PFAM: O-Antigen ligase.
 
  
 0.753
Deba_2772
O-antigen polymerase; InterPro IPR007016; KEGG: dma:DMR_13570 hypothetical membrane protein; PFAM: O-antigen polymerase; SPTR: C4XMQ7 Hypothetical membrane protein; PFAM: O-Antigen ligase.
  
  
 0.685
Deba_1637
Nickel transport complex, NikM subunit, transmembrane; COGs: COG5266 ABC-type Co2+ transport system periplasmic component; InterPro IPR019613; KEGG: ppd:Ppro_1251 ABC-type Co2+ transport system periplasmic component-like protein; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: Q1NY28 ABC-type Co2+ transport system periplasmic component-like; PFAM: Nickel uptake substrate-specific transmembrane region.
 
     0.563
Deba_1266
Iron (metal) dependent repressor, DtxR family; COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367:IPR011991:IPR000835:IPR001808; KEGG: sfu:Sfum_3768 DtxR family iron dependent repressor; PFAM: iron dependent repressor; SMART: iron dependent repressor; regulatory protein Crp; regulatory protein MarR; SPTR: A0LPT5 Iron (Metal) dependent repressor, DtxR family; PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain.
       0.527
Deba_2250
KEGG: pgn:PGN_1918 hypothetical protein; SPTR: C1SMH0 Putative uncharacterized protein.
  
     0.520
Deba_0550
KEGG: dde:Dde_0493 hypothetical protein; SPTR: C1SFS4 Putative uncharacterized protein.
  
     0.510
Deba_1260
KEGG: pca:Pcar_0881 hypothetical protein; SPTR: Q3A671 Putative uncharacterized protein.
 
     0.507
Deba_2341
KEGG: dal:Dalk_0625 hypothetical protein; SPTR: B8FJQ2 Putative uncharacterized protein.
  
     0.502
Deba_3096
Hypothetical protein; KEGG: phe:Phep_2408 heparinase II/III family protein; SPTR: B0NLH9 Putative uncharacterized protein.
  
     0.469
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.