STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
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Deba_1268Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (232 aa)    
Predicted Functional Partners:
Deba_1267
Molybdate ABC transporter, ATPase subunit; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.
 
 0.999
Deba_1269
Molybdenum ABC transporter, periplasmic molybdate-binding protein; COGs: COG0725 ABC-type molybdate transport system periplasmic component; InterPro IPR006059:IPR010916:IPR005950; KEGG: dat:HRM2_09850 ModA4; PFAM: extracellular solute-binding protein family 1; SPTR: C0QL11 ModA4; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein.
 
 
 0.999
Deba_0440
COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000510:IPR005972:IPR010143:IPR000318; KEGG: dsa:Desal_0444 nitrogenase molybdenum-iron protein alpha chain; PFAM: oxidoreductase/nitrogenase component 1; PRIAM: Nitrogenase; SPTR: C8R0M9 Nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase component I, alpha chain; nitrogenase molybdenum-iron protein alpha chain.
  
  
 0.841
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
  
  
 0.830
Deba_0439
Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
  
  
 0.811
Deba_0434
Nitrogenase cofactor biosynthesis protein NifB; COGs: COG0535 Fe-S oxidoreductase; InterProIPR007197:IPR003731:IPR006638:IPR013785:IPR 005980; KEGG: sfu:Sfum_1011 nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM domain protein; Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: C8QZK3 Nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM superfamily; Dinitrogenase iron-molybdenum cofactor; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB.
  
  
 0.672
Deba_0874
Ammonium transporter; COGs: COG0004 Ammonia permease; InterPro IPR001905:IPR018047; KEGG: csc:Csac_1344 ammonium transporter; PFAM: ammonium transporter; SPTR: A4XJ61 Ammonium transporter; TIGRFAM: ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter.
  
    0.642
Deba_0876
Ammonium transporter; COGs: COG0004 Ammonia permease; InterPro IPR001905:IPR018047; KEGG: mpd:MCP_0587 ammonium transporter; PFAM: ammonium transporter; SPTR: A4XJ61 Ammonium transporter; TIGRFAM: ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter.
  
    0.642
Deba_1148
Ammonium transporter; COGs: COG0004 Ammonia permease; InterPro IPR002229:IPR001905:IPR018047; KEGG: tnp:Tnap_0194 ammonium transporter; PFAM: ammonium transporter; SPTR: B1L988 Ammonium transporter; TIGRFAM: ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter.
  
    0.642
Deba_0703
Molybdopterin binding domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
  
 0.609
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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