STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1271Hypothetical protein. (66 aa)    
Predicted Functional Partners:
Deba_1272
COGs: COG5345 conserved hypothetical protein; InterPro IPR016936; KEGG: kko:Kkor_0593 hypothetical protein; PFAM: Uncharacterised conserved protein UCP029693; SPTR: C0N6C1 Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2333).
       0.746
Deba_1273
rfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
       0.586
Deba_1274
COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: ajs:Ajs_3540 ComF family protein; PFAM: phosphoribosyltransferase; SPTR: A1WBM8 ComF family protein; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein.
       0.586
Deba_1275
COGs: COG0538 Isocitrate dehydrogenase; InterPro IPR001804:IPR019818; KEGG: dol:Dole_1908 isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: Isocitrate dehydrogenase (NADP(+)); SPTR: A8ZSH5 Isocitrate dehydrogenase [NADP]; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, prokaryotic type.
       0.586
Deba_1276
InterPro IPR005358; KEGG: drt:Dret_1006 protein of unknown function UPF0153; PFAM: protein of unknown function UPF0153; SPTR: C8X1J7 Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153).
       0.586
Deba_1277
COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286:IPR003084; KEGG: gme:Gmet_1739 histone deacetylase superfamily protein; PFAM: histone deacetylase superfamily; PRIAM: Histone deacetylase; SPTR: Q39UV4 Histone deacetylase superfamily; PFAM: Histone deacetylase domain.
       0.485
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.