STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1313KEGG: tgr:Tgr7_1417 outer membrane protein domain-containing protein; SPTR: Q0YQX8 Putative uncharacterized protein. (223 aa)    
Predicted Functional Partners:
Deba_0099
TonB-dependent siderophore receptor; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531:IPR010105; KEGG: rru:Rru_A0865 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: C1SI40 Outer membrane receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor.
    
 
 0.462
Deba_1121
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dal:Dalk_0342 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: C1SI40 Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
    
 
 0.462
Deba_1127
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dde:Dde_1600 receptor precursor-mostly Fe transport; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Q311J9 Receptor-mostly Fe transport; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor.
    
 
 0.462
Deba_1682
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531:IPR010917; KEGG: dds:Ddes_0429 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: B8J3V6 TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
    
 
 0.462
Deba_2248
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dde:Dde_1600 receptor precursor-mostly Fe transport; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Q311J9 Receptor-mostly Fe transport; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
    
 
 0.462
Deba_2831
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531:IPR018522; KEGG: amr:AM1_A0170 TonB-dependent receptor, putative; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A8ZKH7 TonB-dependent receptor, putative; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor.
    
 
 0.462
Deba_1312
Transcriptional regulator, XRE family; InterPro IPR001387:IPR015927:IPR010982; KEGG: dvm:DvMF_1678 putative phage repressor; SMART: helix-turn-helix domain protein; SPTR: B8DLY0 Putative phage repressor.
       0.415
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.