STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1324Hypothetical protein; Contains Selenocysteine; KEGG: dma:DMR_38750 hypothetical protein; SPTR: C4XN63 Putative uncharacterized protein; manually curated; PFAM: DsrE/DsrF-like family. (106 aa)    
Predicted Functional Partners:
Deba_0011
SirA family protein; InterPro IPR001455; KEGG: tye:THEYE_A1506 hypothetical protein; PFAM: SirA family protein; SPTR: B5YGA5 Putative uncharacterized protein; PFAM: SirA-like protein; Belongs to the sulfur carrier protein TusA family.
  
  
 0.702
Deba_1760
SirA family protein; InterPro IPR001455; KEGG: bay:RBAM_005450 YrkF; PFAM: SirA family protein; SPTR: C8R0L0 SirA family protein; PFAM: SirA-like protein; Belongs to the sulfur carrier protein TusA family.
  
  
 0.702
Deba_3152
Selenium metabolism protein YedF; InterPro IPR019870:IPR001455; KEGG: dal:Dalk_1678 SirA family protein; SPTR: B8FAT0 SirA family protein; TIGRFAM: selenium metabolism protein YedF; PFAM: SirA-like protein; DsrE/DsrF-like family; TIGRFAM: selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
  
  
 0.702
Deba_1325
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
       0.468
panB
3-methyl-2-oxobutanoatehydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.465
Deba_2000
Sulfur relay protein, TusE/DsrC/DsvC family; COGs: COG2920 Dissimilatory sulfite reductase (desulfoviridin) gamma subunit; InterPro IPR007453; KEGG: drt:Dret_1739 sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; PRIAM: Hydrogensulfite reductase; SPTR: C0GTM7 Sulfur relay protein, TusE/DsrC/DsvC family; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC like protein; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family.
  
  
 0.464
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.