Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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Deba_1342Hypothetical protein; InterPro IPR012902; KEGG: noc:Noc_0756 general secretion pathway protein J; SPTR: Q3JD27 General secretion pathway protein J; PFAM: Pseudopilin GspJ; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (209 aa)    
Predicted Functional Partners:
Deba_1337
COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482:IPR003593; KEGG: mca:MCA1114 general secretion pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; SPTR: Q609W3 General secretion pathway protein E; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: general secretory pathway protein E.
  
 
 0.949
Deba_1343
COGs: COG3156 Type II secretory pathway component PulK; KEGG: dat:HRM2_30150 GspK2; SPTR: C0QK72 GspK2; PFAM: General secretion pathway protein K.
  
 
 0.949
Deba_1338
Type II secretion system F domain protein; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076:IPR003004; KEGG: acr:Acry_0892 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: A0Z1L3 General secretion pathway protein F; PFAM: Bacterial type II secretion system protein F domain.
  
  
 0.945
Deba_1341
InterPro IPR012902:IPR001120; KEGG: ctt:CtCNB1_0632 general secretion pathway protein I; SPTR: B8KPH1 General secretion pathway protein I; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
       0.773
Deba_1344
Hypothetical protein; KEGG: cti:RALTA_B0204 exonuclease SbcC; SPTR: B2AI05 Exonuclease SbcC.
       0.773
Deba_1339
General secretion pathway protein G; COGs: COG2165 Type II secretory pathway pseudopilin PulG; InterProIPR012902:IPR013545:IPR001120:IPR000983:IPR 010054; KEGG: mca:MCA1116 general secretion pathway protein G; PFAM: type II secretion system protein G; SPTR: Q609W1 General secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: Prokaryotic N-terminal methylation motif; Bacterial type II secretion system protein G; TIGRFAM: general secretion pathway protein G; prepilin-type N-terminal cleavage/methylation domain.
       0.752
Deba_1340
Hypothetical protein; InterPro IPR012902:IPR001120; KEGG: eba:ebA1616 general secretion protein H; SPTR: Q5P6Q7 General secretion protein H; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
       0.752
Deba_3024
DNA internalization-related competence protein ComEC/Rec2; COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); InterPro IPR004477:IPR004797; KEGG: dal:Dalk_2782 DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; SPTR: B8FKV2 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: Competence protein; Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.697
Deba_1347
Peptidase A24A prepilin type IV; InterPro IPR000045; KEGG: bbr:BB0792 type 4 prepilin-like proteins leader peptide processing enzyme; PFAM: peptidase A24A prepilin type IV; SPTR: A3W196 Peptidase A24A-like; PFAM: Type IV leader peptidase family.
  
  
 0.570
Deba_1106
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
    0.534
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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