STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1348General secretion pathway protein D; COGs: COG1450 Type II secretory pathway component PulD; InterProIPR005644:IPR004846:IPR004845:IPR001775:IPR 013356; KEGG: dat:HRM2_30110 GspD2; PFAM: type II and III secretion system protein; NolW domain protein; SPTR: C5S7Y5 General secretion pathway protein D; TIGRFAM: general secretion pathway protein D; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: general secretion pathway protein D. (746 aa)    
Predicted Functional Partners:
Deba_1338
Type II secretion system F domain protein; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076:IPR003004; KEGG: acr:Acry_0892 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: A0Z1L3 General secretion pathway protein F; PFAM: Bacterial type II secretion system protein F domain.
 
  
 0.871
Deba_1339
General secretion pathway protein G; COGs: COG2165 Type II secretory pathway pseudopilin PulG; InterProIPR012902:IPR013545:IPR001120:IPR000983:IPR 010054; KEGG: mca:MCA1116 general secretion pathway protein G; PFAM: type II secretion system protein G; SPTR: Q609W1 General secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: Prokaryotic N-terminal methylation motif; Bacterial type II secretion system protein G; TIGRFAM: general secretion pathway protein G; prepilin-type N-terminal cleavage/methylation domain.
  
 0.869
Deba_1347
Peptidase A24A prepilin type IV; InterPro IPR000045; KEGG: bbr:BB0792 type 4 prepilin-like proteins leader peptide processing enzyme; PFAM: peptidase A24A prepilin type IV; SPTR: A3W196 Peptidase A24A-like; PFAM: Type IV leader peptidase family.
 
   
 0.868
Deba_1337
COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482:IPR003593; KEGG: mca:MCA1114 general secretion pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; SPTR: Q609W3 General secretion pathway protein E; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: general secretory pathway protein E.
 
  
 0.841
Deba_1345
Hypothetical protein; KEGG: pol:Bpro_0175 17 kDa surface antigen; SPTR: Q12H52 17 kDa surface antigen.
       0.773
Deba_1346
KEGG: mno:Mnod_1789 hypothetical protein; SPTR: B8IR77 Putative uncharacterized protein.
       0.773
Deba_3097
Tetratricopeptide TPR_2 repeat protein; InterProIPR001440:IPR013105:IPR019734:IPR013026:IPR 011990; KEGG: dat:HRM2_20780 tetratricopeptide (TPR) domain protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SPTR: C0QDB3 Tetratricopeptide (TPR) domain protein; PFAM: ChAPs (Chs5p-Arf1p-binding proteins); TIGRFAM: putative PEP-CTERM system TPR-repeat lipoprotein.
  
  
 0.761
Deba_1343
COGs: COG3156 Type II secretory pathway component PulK; KEGG: dat:HRM2_30150 GspK2; SPTR: C0QK72 GspK2; PFAM: General secretion pathway protein K.
 
   
 0.757
Deba_2313
COGs: COG1886 Flagellar motor switch/type III secretory pathway protein; InterPro IPR001543:IPR001172:IPR012826; KEGG: dat:HRM2_37180 FliN; PFAM: surface presentation of antigens (SPOA) protein; SPTR: C0QAJ3 FliN; TIGRFAM: flagellar motor switch protein FliN; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN.
  
  
 0.721
Deba_1349
Hypothetical protein; KEGG: gem:GM21_2663 Ig-like, group 1; SPTR: C6E0S5 Ig-like, group 1.
       0.631
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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