STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1370COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017:IPR009051; KEGG: dol:Dole_0768 hypothetical protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: A8ZVB7 Putative uncharacterized protein; PFAM: Cysteine-rich domain. (383 aa)    
Predicted Functional Partners:
Deba_1371
FAD linked oxidase domain protein; COGs: COG0277 FAD/FMN-containing dehydrogenase; InterProIPR006094:IPR004113:IPR016166:IPR016167:IPR 016168:IPR016164; KEGG: dol:Dole_0769 FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase domain protein; SPTR: A8ZVB8 FAD linked oxidase domain protein; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain.
  
 0.861
Deba_1372
COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017:IPR017900; KEGG: dol:Dole_0770 hypothetical protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: A8ZVB9 Putative uncharacterized protein; PFAM: Cysteine-rich domain.
 
     0.824
Deba_2611
Protein of unknown function DUF1121; InterPro IPR009501; KEGG: cbe:Cbei_1426 hypothetical protein; PFAM: protein of unknown function DUF1121; SPTR: C5RES9 Putative uncharacterized protein; PFAM: Uncharacterised ACR, YkgG family COG1556.
  
 
 0.713
Deba_1369
Thioredoxin domain-containing protein; InterPro IPR012335:IPR012336; KEGG: sfu:Sfum_3604 thioredoxin domain-containing protein; SPTR: A0LPC2 Thioredoxin domain; PFAM: Thioredoxin.
     
 0.519
Deba_1863
COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterProIPR017441:IPR006176:IPR006108:IPR001753:IPR 016040:IPR008927:IPR013328; KEGG: chy:CHY_1609 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; Enoyl-CoA hydratase/isomerase; SPTR: Q3ABP7 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
 
  
 0.519
Deba_1373
KEGG: dps:DP0753 hypothetical protein; SPTR: C8QY26 Putative uncharacterized protein.
       0.470
Deba_0780
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG1150 Heterodisulfide reductase subunit C; InterProIPR009056:IPR017896:IPR012285:IPR009051:IPR 017900; KEGG: dal:Dalk_5066 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FDV6 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Nitrate reductase gamma subunit.
 
 
 0.443
Deba_2115
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG1150 Heterodisulfide reductase subunit C; InterProIPR009051:IPR012285:IPR017896:IPR017900:IPR 006655; KEGG: dal:Dalk_5066 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8FDV6 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Nitrate reductase gamma subunit.
 
 
 0.435
Deba_1537
Protein of unknown function DUF224 cysteine-rich region domain protein; COGs: COG0247 Fe-S oxidoreductase; InterProIPR009051:IPR004017:IPR012285:IPR017896:IPR 017900; KEGG: gem:GM21_0576 protein of unknown function DUF224 cysteine-rich region domain protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: C6DZR8 Putative uncharacterized protein; PFAM: Cysteine-rich domain.
  
     0.433
Deba_0537
COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterProIPR020828:IPR020829:IPR020831:IPR016040:IPR 020832:IPR006424:IPR020830; KEGG: sfu:Sfum_1468 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: A0LIA5 Glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehyd [...]
   
  
 0.410
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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