STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1375COGs: COG0515 Serine/threonine protein kinase; InterProIPR017442:IPR011460:IPR002052:IPR017441:IPR 008271:IPR000719:IPR020635:IPR002290:IPR011009; KEGG: dde:Dde_3468 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; protein of unknown function DUF1566; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; SPTR: Q30VN5 Serine/threonine protein kinase; PFAM: Protein kinase domain; Protein of unknown function (DUF1566). (447 aa)    
Predicted Functional Partners:
Deba_2411
COGs: COG0631 Serine/threonine protein phosphatase; InterPro IPR001932:IPR014045; KEGG: scl:sce3096 phosphoprotein phosphatase; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; SPTR: A9GIE5 Phosphoprotein phosphatase; PFAM: Protein phosphatase 2C.
 
 
 0.902
Deba_1374
Metallophosphoesterase; InterPro IPR004843:IPR011152; KEGG: sfu:Sfum_2718 metallophosphoesterase; PFAM: metallophosphoesterase; SPTR: A0LLU4 Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase.
   
 0.888
Deba_1290
COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain con [...]
   
 
 0.560
Deba_1373
KEGG: dps:DP0753 hypothetical protein; SPTR: C8QY26 Putative uncharacterized protein.
       0.542
rnfA
Electron transport complex, RnfABCDGE type, A subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
  
    0.519
Deba_1468
Protein of unknown function DUF323; COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: dat:HRM2_08290 hypothetical protein; PFAM: protein of unknown function DUF323; SPTR: C0QJT9 Putative uncharacterized protein; PFAM: Formylglycine-generating sulfatase enzyme.
 
  
 0.483
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  
 0.455
Deba_0483
AsmA family protein; InterPro IPR007844:IPR016160; KEGG: noc:Noc_2265 hypothetical protein; PFAM: AsmA family protein; SPTR: Q3J8X3 Putative uncharacterized protein; PFAM: AsmA family.
 
    0.454
Deba_2839
NADH dehydrogenase (quinone); COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterProIPR011538:IPR019554:IPR019575:IPR001450:IPR 012335:IPR017896:IPR012336:IPR017900:IPR001949; KEGG: dal:Dalk_5089 NADH dehydrogenase (quinone); PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: NADH dehydrogenase (quinone); SPTR: B8FDX9 NADH dehydrogenase (Quinone); PFAM: NADH-ubiquinone oxidoreductase-F ir [...]
  
    0.454
Deba_0352
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.451
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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