STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1390Protein serine/threonine phosphatase; COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR003660:IPR010822:IPR001932; KEGG: dae:Dtox_0924 protein serine/threonine phosphatase; PFAM: Stage II sporulation E family protein; histidine kinase HAMP region domain protein; SMART: protein phosphatase 2C domain protein; histidine kinase HAMP region domain protein; SPTR: C8W350 Protein serine/threonine phosphatase; PFAM: HAMP domain; Stage II sporulation protein E (SpoIIE). (553 aa)    
Predicted Functional Partners:
Deba_1290
COGs: COG0642 Signal transduction histidine kinase; InterProIPR001789:IPR013767:IPR003018:IPR013656:IPR 003661:IPR003594:IPR008207:IPR005467:IPR000014:IPR000700:I PR004358:IPR001610:IPR011006:IPR009082; KEGG: dvm:DvMF_1096 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain con [...]
 
  
 0.947
Deba_0154
Anti-sigma-factor antagonist; COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR002645:IPR003658; KEGG: swo:Swol_1795 anti-anti-sigma regulatory factor, SpoIIAA; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Q0AW11 Anti-sigma factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.929
Deba_2006
COGs: COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); InterPro IPR003594; KEGG: mem:Memar_2469 putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; SPTR: D1JH80 Putative uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.918
Deba_2480
Anti-sigma-factor antagonist; InterPro IPR003658:IPR002645; KEGG: sfu:Sfum_1506 anti-sigma-factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: A0LIE3 Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
 
 
 0.901
Deba_1389
Beta-lactamase domain protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: dal:Dalk_0799 beta-lactamase domain protein; SPTR: B8FHT7 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily.
       0.773
Deba_1391
Rubrerythrin; COGs: COG1592 Rubrerythrin; KEGG: chy:CHY_0738 rubrerythrin; SPTR: D0Y5T7 Rubrerythrin.
       0.773
Deba_2858
COGs: COG2233 Xanthine/uracil permease; InterPro IPR006043:IPR018062; KEGG: pth:PTH_2271 xanthine/uracil permeases; PFAM: Xanthine/uracil/vitamin C permease; SPTR: A5CZY9 Xanthine/uracil permeases; PFAM: Permease family; TIGRFAM: uracil-xanthine permease.
 
 
 0.757
Deba_1234
Anti-sigma-factor antagonist; InterPro IPR002645; KEGG: pca:Pcar_1874 anti-anti-sigma regulatory factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Q1NPE5 Sulfate transporter/antisigma-factor antagonist STAS; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
 
 
 0.742
Deba_2334
Peptidase M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR011055:IPR019301:IPR016047; KEGG: tte:TTE1975 membrane proteins related to metalloendopeptidase; PFAM: Peptidase M23; Flagellar protein FlgJ-like; SPTR: Q8R8M0 Membrane proteins related to metalloendopeptidases; PFAM: Rod binding protein; Peptidase family M23.
   
    0.733
Deba_1388
Oxidoreductase molybdopterin binding protein; COGs: COG2041 Sulfite oxidase; InterPro IPR000572; KEGG: afw:Anae109_4218 oxidoreductase molybdopterin binding; PFAM: oxidoreductase molybdopterin binding; SPTR: C0GHN9 Oxidoreductase molybdopterin binding; PFAM: Oxidoreductase molybdopterin binding domain.
     
 0.711
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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