STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1391Rubrerythrin; COGs: COG1592 Rubrerythrin; KEGG: chy:CHY_0738 rubrerythrin; SPTR: D0Y5T7 Rubrerythrin. (164 aa)    
Predicted Functional Partners:
Deba_1389
Beta-lactamase domain protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: dal:Dalk_0799 beta-lactamase domain protein; SPTR: B8FHT7 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily.
     
 0.780
Deba_1390
Protein serine/threonine phosphatase; COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR003660:IPR010822:IPR001932; KEGG: dae:Dtox_0924 protein serine/threonine phosphatase; PFAM: Stage II sporulation E family protein; histidine kinase HAMP region domain protein; SMART: protein phosphatase 2C domain protein; histidine kinase HAMP region domain protein; SPTR: C8W350 Protein serine/threonine phosphatase; PFAM: HAMP domain; Stage II sporulation protein E (SpoIIE).
       0.773
Deba_1388
Oxidoreductase molybdopterin binding protein; COGs: COG2041 Sulfite oxidase; InterPro IPR000572; KEGG: afw:Anae109_4218 oxidoreductase molybdopterin binding; PFAM: oxidoreductase molybdopterin binding; SPTR: C0GHN9 Oxidoreductase molybdopterin binding; PFAM: Oxidoreductase molybdopterin binding domain.
       0.701
Deba_2825
Cupin 2 conserved barrel domain protein; InterPro IPR013096:IPR010462:IPR014710:IPR011051; KEGG: dal:Dalk_1201 cupin 2 conserved barrel domain protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: C0GMJ0 Cupin 2 conserved barrel domain protein; PFAM: Cupin domain.
  
     0.514
fur-2
Ferric uptake regulator, Fur family; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: drt:Dret_0141 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; SPTR: C8R2S3 Ferric uptake regulator, Fur family; PFAM: Ferric uptake regulator family; Belongs to the Fur family.
 
  
 0.486
Deba_1392
Response regulator receiver protein; InterProIPR001789:IPR001440:IPR013105:IPR019734:IPR 013026:IPR011990:IPR006597:IPR011006; KEGG: dat:HRM2_46700 TPR-repeat-containing protein with CheY-like receiver; PFAM: response regulator receiver; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: response regulator receiver; Tetratricopeptide repeat; Sel1 domain protein repeat-containing protein; SPTR: C0QGE7 TPR-repeat-containing protein with CheY-like receiver; PFAM: Response regulator receiver domain; Tetratricopeptide repeat.
       0.485
fur
Ferric uptake regulator, Fur family; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: dvm:DvMF_1241 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; SPTR: B8DLC9 Ferric uptake regulator, Fur family; PFAM: Ferric uptake regulator family; Belongs to the Fur family.
 
  
 0.425
Deba_0582
Rubrerythrin; InterPro IPR003251:IPR009078:IPR012347; KEGG: dal:Dalk_3005 rubrerythrin; PFAM: Rubrerythrin; SPTR: B8FL60 Rubrerythrin; PFAM: Rubrerythrin.
  
  
 0.424
Deba_1891
Conserved hypothetical protein; COGs: COG1661 DNA-binding protein with PD1-like DNA-binding motif; KEGG: dma:DMR_35880 hypothetical protein; SPTR: C4XLE0 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF296).
  
     0.424
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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