Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Deba_1410COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: shi:Shel_26550 predicted TIM-barrel fold metal-dependent hydrolase; PFAM: amidohydrolase 2; SPTR: B0MKA2 Putative uncharacterized protein; manually curated; PFAM: Amidohydrolase. (287 aa)    
Predicted Functional Partners:
Deba_1411
COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004089:IPR018212:IPR004090; KEGG: drt:Dret_2373 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: C8X5F8 Methyl-accepting chemotaxis sensory transducer; PFAM: Cache domain; Methyl-accepting chemotaxis protein (MCP) signaling domain.
       0.515
Deba_1409
Protein of unknown function DUF34; COGs: COG0327 conserved hypothetical protein; InterPro IPR002678:IPR017221:IPR011322; KEGG: sth:STH598 hypothetical protein; PFAM: protein of unknown function DUF34; SPTR: Q67RW0 Putative uncharacterized protein; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: conserved hypothetical protein TIGR00486; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
       0.415
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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