Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Deba_1418COGs: COG4623 soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; InterPro IPR008258:IPR000189; KEGG: drm:Dred_2511 lytic transglycosylase, catalytic; PFAM: Lytic transglycosylase catalytic; SPTR: A4J7G8 Lytic transglycosylase, catalytic; PFAM: Transglycosylase SLT domain. (261 aa)    
Predicted Functional Partners:
Deba_2334
Peptidase M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR011055:IPR019301:IPR016047; KEGG: tte:TTE1975 membrane proteins related to metalloendopeptidase; PFAM: Peptidase M23; Flagellar protein FlgJ-like; SPTR: Q8R8M0 Membrane proteins related to metalloendopeptidases; PFAM: Rod binding protein; Peptidase family M23.
   
 0.562
Deba_1419
Peptidase U62 modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: ade:Adeh_3846 microcin-processing peptidase 2; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: Q2IGA1 Putative uncharacterized protein; PFAM: Putative modulator of DNA gyrase.
       0.534
Deba_1420
Peptidase U62 modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: afw:Anae109_3957 peptidase U62 modulator of DNA gyrase; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: A7HHD9 Peptidase U62 modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase.
       0.534
Deba_0346
OmpA/MotB domain protein; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: rce:RC1_1008 chemotaxis MotB protein; PFAM: OmpA/MotB domain protein; SPTR: A6EY60 Flagellar motor protein; PFAM: OmpA family.
 
  
 0.507
Deba_1236
OmpA/MotB domain protein; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: dat:HRM2_28640 MotB2; PFAM: OmpA/MotB domain protein; SPTR: C0QJD9 MotB2; PFAM: OmpA family.
 
  
 0.499
Deba_1620
OmpA/MotB domain protein; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: dsa:Desal_3399 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: C6BSJ2 OmpA/MotB domain protein; PFAM: OmpA family.
 
  
 0.498
Deba_1417
KEGG: dol:Dole_0562 hypothetical protein; SPTR: A8ZU60 Putative uncharacterized protein.
       0.496
Deba_2309
OmpA/MotB domain protein; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: nmu:Nmul_A1315 flagellar motor protein MotD; PFAM: OmpA/MotB domain protein; SPTR: Q2Y9F3 OmpA/MotB; PFAM: OmpA family.
 
  
 0.454
Deba_2310
OmpA/MotB domain protein; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: tai:Taci_1325 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: D1B6B5 OmpA/MotB domain protein; PFAM: OmpA family.
 
  
 0.452
Deba_1986
Type II secretion system protein E; COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR017975:IPR001482; KEGG: dde:Dde_2363 type II/IV secretion system protein; PFAM: type II secretion system protein E; SPTR: Q30YT6 Type II/IV secretion system protein; PFAM: Type II/IV secretion system protein.
  
  
 0.423
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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