STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1419Peptidase U62 modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: ade:Adeh_3846 microcin-processing peptidase 2; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: Q2IGA1 Putative uncharacterized protein; PFAM: Putative modulator of DNA gyrase. (486 aa)    
Predicted Functional Partners:
Deba_1420
Peptidase U62 modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: afw:Anae109_3957 peptidase U62 modulator of DNA gyrase; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: A7HHD9 Peptidase U62 modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase.
 
 
0.955
Deba_2865
Peptidase U62 modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510:IPR008263; KEGG: gme:Gmet_0947 peptidase U62, modulator of DNA gyrase; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: C6MMK6 Peptidase U62 modulator of DNA gyrase; PFAM: Putative modulator of DNA gyrase.
 
 
0.808
Deba_1421
KEGG: dps:DP0712 hypothetical protein; SPTR: Q6AQD2 Putative uncharacterized protein; PFAM: Putative exonuclease, RdgC.
       0.578
Deba_1422
KEGG: dal:Dalk_3852 hypothetical protein; SPTR: B8FCC0 Putative uncharacterized protein.
       0.578
Deba_1418
COGs: COG4623 soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; InterPro IPR008258:IPR000189; KEGG: drm:Dred_2511 lytic transglycosylase, catalytic; PFAM: Lytic transglycosylase catalytic; SPTR: A4J7G8 Lytic transglycosylase, catalytic; PFAM: Transglycosylase SLT domain.
       0.534
Deba_1423
Hypothetical protein; KEGG: GPRMTHL1; methuselah-like (AGAP006215-PA); SPTR: Q7PNU0 Methuselah-like (AGAP006215-PA).
       0.504
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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