STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1431ABC transporter related protein; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR017871:IPR017940:IPR 003593:IPR011527; KEGG: dal:Dalk_3747 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: B8FLT0 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter. (707 aa)    
Predicted Functional Partners:
Deba_1432
ABC transporter related protein; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140:IPR003439:IPR017871:IPR017940:IPR 003593:IPR011527; KEGG: dal:Dalk_3748 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: B8FLT1 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter.
 
  
 
0.982
Deba_1430
Short-chain dehydrogenase/reductase SDR; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR016040:IPR002347; KEGG: sfu:Sfum_0112 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: A0LEG3 Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase.
 
 
 0.848
Deba_1433
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; COGs: COG0526 Thiol-disulfide isomerase and thioredoxins; InterPro IPR000866:IPR017936:IPR012335:IPR012336; KEGG: rmr:Rmar_1898 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: D0MJX3 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family.
  
    0.781
Deba_2499
ABC transporter related protein; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterProIPR017871:IPR003593:IPR011527:IPR001140:IPR 003439:IPR017940; KEGG: dae:Dtox_0940 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C8W366 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter.
 
 
 
0.646
Deba_2500
ABC transporter related protein; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterProIPR017871:IPR003593:IPR011527:IPR005074:IPR 001140:IPR003439:IPR017940; KEGG: dae:Dtox_0939 ABC transporter related; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C8W365 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter; Peptidase C39 family.
 
 
 
0.640
Deba_1434
COGs: COG0557 Exoribonuclease R; InterPro IPR001900; KEGG: dal:Dalk_3638 exoribonuclease II; PFAM: ribonuclease II; PRIAM: Exoribonuclease II; SPTR: B8FGU6 Exoribonuclease II; PFAM: RNB domain; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases.
 
 
  0.616
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.562
Deba_2465
ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439:IPR015851; KEGG: pth:PTH_1476 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: A5D288 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter; TIGRFAM: daunorubicin resistance ABC transporter ATP-binding subunit.
0.562
Deba_1975
COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR005101; KEGG: hoh:Hoch_4973 DNA photolyase FAD-binding protein; PFAM: DNA photolyase FAD-binding; PRIAM: Deoxyribodipyrimidine photo-lyase; SPTR: D0LU98 DNA photolyase FAD-binding protein; PFAM: FAD binding domain of DNA photolyase; TIGRFAM: photolyase PhrII.
   
 
 0.548
Deba_0528
ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: dma:DMR_22930 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C4XSU2 Putative ABC transporter ATP-binding protein; PFAM: ABC transporter.
  
0.539
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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