STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Deba_1440TPR repeat-containing protein; COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR001440:IPR019734:IPR013026:IPR011990; KEGG: dsa:Desal_2816 tetratricopeptide TPR_2 repeat protein; PFAM: TPR repeat-containing protein; SPTR: C6BZZ7 Tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide repeat. (247 aa)    
Predicted Functional Partners:
Deba_1441
CDP-alcohol phosphatidyltransferase; COGs: COG0558 Phosphatidylglycerophosphate synthase; InterPro IPR000462; KEGG: bcv:Bcav_2296 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: C5BVU6 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.752
Deba_2016
PBS lyase HEAT domain protein repeat-containing protein; COGs: COG1413 FOG: HEAT repeat; InterPro IPR004155:IPR016024:IPR011989; KEGG: dds:Ddes_1378 heat domain containing protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; SPTR: B8J0K3 HEAT domain containing protein; PFAM: PBS lyase HEAT-like repeat; HEAT repeat.
  
     0.745
Deba_0507
Diguanylate cyclase and serine/threonine protein kinase with TPR repeats; InterProIPR000160:IPR001440:IPR013105:IPR006597:IPR 011717:IPR019734:IPR011990:IPR013026; KEGG: drt:Dret_2188 diguanylate cyclase and serine/threonine protein kinase with TPR repeats; PFAM: Tetratricopeptide TPR_2 repeat protein; GGDEF domain containing protein; TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_4; SMART: GGDEF domain containing protein; Tetratricopeptide repeat; SPTR: C8X4X5 Diguanylate cyclase and serine/threonine protein kinase with TPR repeats; [...]
 
   
 0.731
hisF
Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
       0.714
hisH
Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.
       0.714
Deba_2348
KEGG: dde:Dde_0564 hypothetical protein; SPTR: Q315N1 Putative uncharacterized protein.
  
     0.711
Deba_1437
Bifunctional GlmU protein; COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterPro IPR001451:IPR011004; KEGG: dps:DP2923 bifunctional GlmU protein; SPTR: C0GCM6 Bifunctional GlmU protein.
       0.657
Deba_2906
KEGG: dvm:DvMF_0342 hypothetical protein; SPTR: B8DPL2 Putative uncharacterized protein.
  
     0.639
Deba_0907
Tetratricopeptide TPR_2 repeat protein; InterProIPR019734:IPR013026:IPR011990:IPR001440:IPR 013105; KEGG: dvm:DvMF_1325 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: B8DLL2 TPR repeat-containing protein; TIGRFAM: outer membrane assembly lipoprotein YfiO.
 
   
 0.636
Deba_1435
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; COGs: COG3467 flavin-nucleotide-binding protein; InterPro IPR011576:IPR012349:IPR009002; KEGG: dma:DMR_07650 hypothetical protein; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: C4XJ92 Putative uncharacterized protein; PFAM: Pyridoxamine 5'-phosphate oxidase.
       0.612
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
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