STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Deba_1508Hypothetical protein; InterPro IPR011990; KEGG: sfu:Sfum_2878 hypothetical protein; SPTR: A0LMA3 Putative uncharacterized protein. (220 aa)    
Predicted Functional Partners:
Deba_1509
single-stranded-DNA-specific exonuclease RecJ; COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR001667:IPR003156:IPR004610; KEGG: ade:Adeh_2536 single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: Q2IKX4 Single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ.
     
 0.587
Deba_2010
KEGG: sus:Acid_5380 hypothetical protein; SPTR: Q01VI6 Putative uncharacterized protein; PFAM: Disulphide bond corrector protein DsbC.
  
     0.541
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.528
Deba_2799
InterPro IPR018711; KEGG: sfu:Sfum_0247 hypothetical protein; PFAM: Protein of unknown function DUF2233, periplasmic; SPTR: A0LEU6 Putative uncharacterized protein; PFAM: Predicted periplasmic protein (DUF2233).
  
     0.448
Deba_2689
Hypothetical protein; InterPro IPR002345:IPR011990; KEGG: sti:Sthe_1174 tetratricopeptide TPR_4; SPTR: D1C2Z3 Tetratricopeptide TPR_4; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
 
   
 0.445
Deba_1272
COGs: COG5345 conserved hypothetical protein; InterPro IPR016936; KEGG: kko:Kkor_0593 hypothetical protein; PFAM: Uncharacterised conserved protein UCP029693; SPTR: C0N6C1 Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2333).
  
     0.440
Deba_1507
Carbohydrate kinase, FGGY; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: hch:HCH_04623 sugar (pentulose and hexulose) kinase; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Q2SDF1 Sugar (Pentulose and hexulose) kinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain.
       0.427
Deba_0907
Tetratricopeptide TPR_2 repeat protein; InterProIPR019734:IPR013026:IPR011990:IPR001440:IPR 013105; KEGG: dvm:DvMF_1325 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: B8DLL2 TPR repeat-containing protein; TIGRFAM: outer membrane assembly lipoprotein YfiO.
 
   
 0.425
Deba_1117
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.425
Deba_2369
InterPro IPR012480; KEGG: app:CAP2UW1_0857 heparinase II/III family protein; PFAM: Heparinase II/III family protein; SPTR: C7RNQ9 Heparinase II/III family protein; PFAM: Heparinase II/III-like protein.
  
     0.424
Your Current Organism:
Desulfarculus baarsii
NCBI taxonomy Id: 644282
Other names: D. baarsii DSM 2075, Desulfarculus baarsii 2st 14, Desulfarculus baarsii DSM 2075, Desulfarculus baarsii str. DSM 2075, Desulfarculus baarsii strain DSM 2075
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.